Sinobacterium caligoides strain DSM 100316

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Sinobacterium

Description

Sinobacterium caligoides strain DSM 100316 is a Gram-negative, non-motile rod-shaped bacterium. It is classified within the mesophilic temperature range, with an optimal growth temperature of 25°C. This organism possesses a single replicon, indicating a relatively simple genomic structure, which may have implications for its genetic stability and adaptability. The Gram-negative classification suggests that Sinobacterium caligoides has a unique cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane, which could influence its interaction with the environment and other microorganisms. Its non-motile nature indicates that it may rely on passive dispersal methods or external forces for movement within its habitat, rather than active motility. The optimal growth temperature of 25°C positions this strain in environments that are neither too hot nor too cold, likely favoring habitats such as soil or aquatic systems where moderate conditions prevail. This ecological niche may allow Sinobacterium caligoides to play a role in nutrient cycling and microbial community dynamics. In summary, Sinobacterium caligoides strain DSM 100316 exhibits traits typical of its classification, with specific adaptations to mesophilic environments. Its structural characteristics and growth preferences suggest it may contribute to ecological processes in temperate habitats, although further research would be necessary to elucidate its specific roles and interactions within those ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusSinobacterium
SpeciesSinobacterium caligoides
Strainstrain DSM 100316

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinobacterium caligoides strain DSM 100316 Ga0244720_109, whole

Gene Summary

Adenine Count

1169934 bp

Thymine Count

1030279 bp

Guanine Count

969416 bp

Cytosine Count

1228637 bp

Genome Length

4399319 bp

Protein-coding Genes

3773 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phage shock protein eEDC56_0384Not AvailableNegative432858 - 43317811527.8
sodium/proton antiporter (cpa1 family)EDC56_0385Not AvailablePositive433653 - 43549166345.7
two-component system phosphate regulon sensor histidine kinase phorEDC56_0386Not AvailableNegative435488 - 43672345860.9
winged helix family two component transcriptional regulatorEDC56_0387Not AvailableNegative436875 - 43758526549.9
formyltetrahydrofolate deformylaseEDC56_0388Not AvailableNegative437685 - 43853932511.8
putative radical sam protein ygiqEDC56_0389Not AvailablePositive438761 - 44119391043.4
diguanylate cyclase (ggdef)-like proteinEDC56_0390Not AvailablePositive441404 - 44257943573.2
trna pseudouridine32 synthase/23s rrna pseudouridine746 synthaseEDC56_0391Not AvailablePositive442628 - 44349132424.9
uncharacterized protein yehs (duf1456 family)EDC56_0392Not AvailablePositive443765 - 44422317931.6
hypothetical proteinEDC56_0393Not AvailablePositive444244 - 44453110567.7

Displaying genes 451 – 460 of 3886 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.