Sinobacterium caligoides strain DSM 100316

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Sinobacterium

Description

Sinobacterium caligoides strain DSM 100316 is a Gram-negative, non-motile rod-shaped bacterium. It is classified within the mesophilic temperature range, with an optimal growth temperature of 25°C. This organism possesses a single replicon, indicating a relatively simple genomic structure, which may have implications for its genetic stability and adaptability. The Gram-negative classification suggests that Sinobacterium caligoides has a unique cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane, which could influence its interaction with the environment and other microorganisms. Its non-motile nature indicates that it may rely on passive dispersal methods or external forces for movement within its habitat, rather than active motility. The optimal growth temperature of 25°C positions this strain in environments that are neither too hot nor too cold, likely favoring habitats such as soil or aquatic systems where moderate conditions prevail. This ecological niche may allow Sinobacterium caligoides to play a role in nutrient cycling and microbial community dynamics. In summary, Sinobacterium caligoides strain DSM 100316 exhibits traits typical of its classification, with specific adaptations to mesophilic environments. Its structural characteristics and growth preferences suggest it may contribute to ecological processes in temperate habitats, although further research would be necessary to elucidate its specific roles and interactions within those ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusSinobacterium
SpeciesSinobacterium caligoides
Strainstrain DSM 100316

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinobacterium caligoides strain DSM 100316 Ga0244720_109, whole

Gene Summary

Adenine Count

1169934 bp

Thymine Count

1030279 bp

Guanine Count

969416 bp

Cytosine Count

1228637 bp

Genome Length

4399319 bp

Protein-coding Genes

3773 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron(iii) transport system atp-binding proteinEDC56_3864Not AvailableNegative4318381 - 431943038701.3
acetylornithine aminotransferaseEDC56_3865Not AvailableNegative4319489 - 432070343570.6
monothiol glutaredoxinEDC56_3866Not AvailablePositive4320890 - 432121311888.3
bacterioferritinEDC56_3867Not AvailableNegative4321259 - 432173217957.4
bacterioferritin-associated ferredoxinEDC56_3868Not AvailableNegative4321837 - 43220497690.28
peroxiredoxin (alkyl hydroperoxide reductase subunit c)EDC56_3869Not AvailablePositive4322273 - 432287521647.5
hypothetical proteinEDC56_3870Not AvailableNegative4322961 - 43231607226.99
hypothetical proteinEDC56_3871Not AvailableNegative4323161 - 43233376742.24
alanine-glyoxylate aminotransferase-like proteinEDC56_3872Not AvailableNegative4323384 - 432466445839.8
yebc/pmpr family dna-binding regulatory proteinEDC56_3873Not AvailableNegative4324868 - 432562026583.3

Displaying genes 3811 – 3820 of 3886 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.