Sinobacterium caligoides strain DSM 100316

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Sinobacterium

Description

Sinobacterium caligoides strain DSM 100316 is a Gram-negative, non-motile rod-shaped bacterium. It is classified within the mesophilic temperature range, with an optimal growth temperature of 25°C. This organism possesses a single replicon, indicating a relatively simple genomic structure, which may have implications for its genetic stability and adaptability. The Gram-negative classification suggests that Sinobacterium caligoides has a unique cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane, which could influence its interaction with the environment and other microorganisms. Its non-motile nature indicates that it may rely on passive dispersal methods or external forces for movement within its habitat, rather than active motility. The optimal growth temperature of 25°C positions this strain in environments that are neither too hot nor too cold, likely favoring habitats such as soil or aquatic systems where moderate conditions prevail. This ecological niche may allow Sinobacterium caligoides to play a role in nutrient cycling and microbial community dynamics. In summary, Sinobacterium caligoides strain DSM 100316 exhibits traits typical of its classification, with specific adaptations to mesophilic environments. Its structural characteristics and growth preferences suggest it may contribute to ecological processes in temperate habitats, although further research would be necessary to elucidate its specific roles and interactions within those ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusSinobacterium
SpeciesSinobacterium caligoides
Strainstrain DSM 100316

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinobacterium caligoides strain DSM 100316 Ga0244720_109, whole

Gene Summary

Adenine Count

1169934 bp

Thymine Count

1030279 bp

Guanine Count

969416 bp

Cytosine Count

1228637 bp

Genome Length

4399319 bp

Protein-coding Genes

3773 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trimethylamine-n-oxide reductase (cytochrome c)EDC56_0294Not AvailableNegative323396 - 32588592424.2
trimethylamine-n-oxide reductase cytochrome c-type subunit torcEDC56_0295Not AvailableNegative325898 - 32707644270.7
nitrate reductase napeEDC56_0296Not AvailableNegative327122 - 3272896082.58
succinyl-coa synthetase (adp-forming) alpha subunitEDC56_0297Not AvailableNegative327658 - 32853329972.2
succinyl-coa synthetase beta subunitEDC56_0298Not AvailableNegative328540 - 32970041116.5
dihydrolipoamide dehydrogenaseEDC56_0299Not AvailableNegative329861 - 33130950892.4
2-oxoglutarate dehydrogenase e2 componentEDC56_0300Not AvailableNegative331439 - 33264142912.8
2-oxoglutarate dehydrogenase e1 componentEDC56_0301Not AvailableNegative332760 - 335588105710.0
succinate dehydrogenase / fumarate reductase iron-sulfur subunitEDC56_0302Not AvailableNegative335879 - 33658626222.7
succinate dehydrogenase subunit aEDC56_0303Not AvailableNegative336602 - 33837164081.1

Displaying genes 361 – 370 of 3886 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.