Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Spongiibacteraceae
Genus
Sinobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Spongiibacteraceae |
| Genus | Sinobacterium |
| Species | Sinobacterium caligoides |
| Strain | strain DSM 100316 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1169934 bp
Thymine Count
1030279 bp
Guanine Count
969416 bp
Cytosine Count
1228637 bp
Genome Length
4399319 bp
Protein-coding Genes
3773 genes
Non-Coding Genes
111 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate-1-semialdehyde 2,1-aminomutase | EDC56_3036 | Not Available | Positive | 3455367 - 3456647 | 45614.7 |
| outer membrane protein | EDC56_3037 | Not Available | Positive | 3456740 - 3457399 | 24408.5 |
| 8-oxo-dgtp pyrophosphatase mutt (nudix family) | EDC56_3038 | Not Available | Negative | 3457467 - 3458057 | 22446.7 |
| tetratricopeptide repeat protein | EDC56_3039 | Not Available | Negative | 3458148 - 3458624 | 16512.6 |
| penicillin-binding protein 1b | EDC56_3040 | Not Available | Negative | 3458696 - 3461056 | 87672.3 |
| sugar/nucleoside kinase (ribokinase family) | EDC56_3041 | Not Available | Positive | 3461226 - 3462212 | 34899.2 |
| 23s rrna m(1)g-745 methyltransferase | EDC56_3042 | Not Available | Positive | 3462307 - 3463137 | 30781.4 |
| topoisomerase-4 subunit b | EDC56_3043 | Not Available | Negative | 3463146 - 3465029 | 68628.6 |
| hypothetical protein | EDC56_3044 | Not Available | Negative | 3465125 - 3465706 | 21644.0 |
| icc protein | EDC56_3045 | Not Available | Negative | 3465749 - 3466552 | 29936.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
