Sinobacterium caligoides strain DSM 100316

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Sinobacterium

Description

Sinobacterium caligoides strain DSM 100316 is a Gram-negative, non-motile rod-shaped bacterium. It is classified within the mesophilic temperature range, with an optimal growth temperature of 25°C. This organism possesses a single replicon, indicating a relatively simple genomic structure, which may have implications for its genetic stability and adaptability. The Gram-negative classification suggests that Sinobacterium caligoides has a unique cell wall structure, characterized by a thin peptidoglycan layer and an outer membrane, which could influence its interaction with the environment and other microorganisms. Its non-motile nature indicates that it may rely on passive dispersal methods or external forces for movement within its habitat, rather than active motility. The optimal growth temperature of 25°C positions this strain in environments that are neither too hot nor too cold, likely favoring habitats such as soil or aquatic systems where moderate conditions prevail. This ecological niche may allow Sinobacterium caligoides to play a role in nutrient cycling and microbial community dynamics. In summary, Sinobacterium caligoides strain DSM 100316 exhibits traits typical of its classification, with specific adaptations to mesophilic environments. Its structural characteristics and growth preferences suggest it may contribute to ecological processes in temperate habitats, although further research would be necessary to elucidate its specific roles and interactions within those ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusSinobacterium
SpeciesSinobacterium caligoides
Strainstrain DSM 100316

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinobacterium caligoides strain DSM 100316 Ga0244720_109, whole

Gene Summary

Adenine Count

1169934 bp

Thymine Count

1030279 bp

Guanine Count

969416 bp

Cytosine Count

1228637 bp

Genome Length

4399319 bp

Protein-coding Genes

3773 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tyrosyl-trna synthetaseEDC56_3026Not AvailableNegative3446383 - 344769047964.0
murein dd-endopeptidase mepm/ murein hydrolase activator nlpdEDC56_3027Not AvailablePositive3447924 - 344937853364.1
anhydro-n-acetylmuramic acid kinaseEDC56_3028Not AvailablePositive3449371 - 345049541154.8
hypothetical proteinEDC56_3029Not AvailableNegative3450503 - 345095816869.5
iron-sulfur cluster insertion proteinEDC56_3030Not AvailableNegative3450968 - 345132412497.7
cytoskeletal protein ccma (bactofilin family)EDC56_3031Not AvailableNegative3451437 - 345186814977.5
hypothetical proteinEDC56_3032Not AvailableNegative3451868 - 345259627938.7
n-acetyl-gamma-glutamyl-phosphate reductaseEDC56_3033Not AvailableNegative3452596 - 345362736653.1
putative membrane proteinEDC56_3034Not AvailablePositive3453839 - 345425816502.7
hydroxymethylpyrimidine/phosphomethylpyrimidine kinaseEDC56_3035Not AvailablePositive3454392 - 345518629063.7

Displaying genes 2991 – 3000 of 3886 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.