Sinobacterium caligoides strain DSM 100316

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Spongiibacteraceae

Genus

Sinobacterium

Description

Sinobacterium caligoides strain DSM 100316 is a Gram-negative, rod-shaped bacterium that exhibits optimal growth at a temperature of 25.0°C. This organism belongs to a group characterized by its distinct morphological and physiological features, which contribute to its adaptability in various environments. The Gram-negative nature of S. caligoides suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer specific advantages in response to environmental stressors. As a rod-shaped bacterium, S. caligoides may exhibit a variety of metabolic pathways that enable it to thrive in its ecological niche. The optimal growth temperature indicates that this microbe is likely adapted to moderate temperature environments, which may influence its distribution and interactions within microbial communities. The physiological traits of S. caligoides may allow it to participate in biogeochemical cycles, potentially playing a role in nutrient cycling or organic matter decomposition in its habitat. Further investigation into the metabolic capabilities and ecological roles of S. caligoides could reveal insights into its interactions with other microorganisms and its contributions to ecosystem function. Understanding these dynamics may have implications for biotechnological applications, particularly in environments where temperature control is crucial for microbial activity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusSinobacterium
SpeciesSinobacterium caligoides
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sinobacterium caligoides strain DSM 100316

Accession NumberRKHR00000000.1

Gene Summary

Adenine Count

1169934 bp

Thymine Count

1030279 bp

Guanine Count

969416 bp

Cytosine Count

1228637 bp

Genome Length

4399319 bp

Protein-coding Genes

3773 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail tube proteinEDC56_1218Not Available-1394642 - 139514217942.8
Putative tail sheath proteinEDC56_1219Not Available-1395139 - 139651849983.8
Virion structural proteinEDC56_1220Not Available-1396608 - 139908888055.6
Tail fibers proteinEDC56_1221Not Available-1399134 - 140006034661.8
Baseplate assembly protein jEDC56_1222Not Available-1400063 - 140097133471.4
Gp39, phage baseplate assembly proteinEDC56_1223Not Available-1401015 - 140192333975.3
Baseplate assembly proteinEDC56_1224Not Available-1401968 - 140231212767.6
AttlNot AvailableNot Available+1428812 - 1428834Not Available
Hypothetical proteinEDC56_1247Not Available-1430345 - 143086318988.8
hypothetical proteinEDC56_1248Not Available-1430847 - 143120312755.4

Displaying genes 11 – 20 of 3886 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites