Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Cellvibrionales
Family
Spongiibacteraceae
Genus
Sinobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Spongiibacteraceae |
| Genus | Sinobacterium |
| Species | Sinobacterium caligoides |
| Strain | strain DSM 100316 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1169934 bp
Thymine Count
1030279 bp
Guanine Count
969416 bp
Cytosine Count
1228637 bp
Genome Length
4399319 bp
Protein-coding Genes
3773 genes
Non-Coding Genes
111 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isocitrate dehydrogenase | EDC56_0075 | Not Available | Negative | 80840 - 83065 | 80749.5 |
| adp-ribose pyrophosphatase yjhb (nudix family) | EDC56_0076 | Not Available | Positive | 83359 - 83817 | 17331.5 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | EDC56_0077 | Not Available | Positive | 83831 - 84958 | 41608.3 |
| high frequency lysogenization protein | EDC56_0078 | Not Available | Positive | 84978 - 85610 | 23618.7 |
| adenylosuccinate lyase | EDC56_0079 | Not Available | Positive | 85710 - 87077 | 50818.7 |
| 50s ribosomal protein l16 3-hydroxylase | EDC56_0080 | Not Available | Positive | 87229 - 88386 | 43754.5 |
| putative gnat family n-acyltransferase | EDC56_0081 | Not Available | Positive | 88358 - 88795 | 16390.5 |
| phosphoenolpyruvate synthase | EDC56_0082 | Not Available | Negative | 88846 - 91215 | 87074.4 |
| hypothetical protein | EDC56_0083 | Not Available | Positive | 91364 - 92182 | 30354.8 |
| site-specific recombinase xerd | EDC56_0084 | Not Available | Negative | 92192 - 93193 | 37290.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
