Vibrio viridaestus strain LJC006

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio viridaestus strain LJC006 is characterized by having a single replicon, which is an important trait for understanding its genomic architecture and stability. The complete genomic sequence of this strain is available under the accession number RJVQ00000000.1, providing a valuable resource for researchers interested in its genetic makeup and potential applications. This strain belongs to the Vibrio genus, which includes various species known for their ecological roles, particularly in marine environments. Vibrio species are often associated with aquatic organisms and are significant in nutrient cycling within their ecosystems. The presence of a single replicon may suggest certain genomic efficiencies that could influence the strain's adaptability and survival in changing environments. In the context of ecological interactions, Vibrio species, including V. viridaestus, can play critical roles in symbiotic relationships, pathogenicity, or as part of the microbial community in marine habitats. The genomic information encoded in the strain LJC006 can provide insights into the metabolic pathways and environmental adaptations that enable it to thrive in specific ecological niches. Understanding these traits can contribute to our knowledge of microbial biodiversity and the functional roles of Vibrio species in their respective ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio viridaestus
Strainstrain LJC006

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio viridaestus strain LJC006
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio viridaestus strain LJC006 scaffold_245, whole genome

Gene Summary

Adenine Count

1364069 bp

Thymine Count

1374677 bp

Guanine Count

999886 bp

Cytosine Count

973698 bp

Genome Length

4729331 bp

Protein-coding Genes

4249 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive1160040 - 1160061Not Available
IntegraseEES38_05205Not AvailableNegative1160237 - 116131040881.1
zinc ribbon domain-containing proteinEES38_05210Not AvailableNegative1161315 - 116189021311.9
hypothetical proteinEES38_05215Not AvailableNegative1161912 - 116272431336.1
CiEES38_05220Not AvailableNegative1162753 - 116343325396.6
CoxEES38_05225Not AvailablePositive1163603 - 11638157912.79
Regulatory cii family proteinEES38_05230Not AvailablePositive1163924 - 116446319457.8
Protein of unknown function duf5347EES38_05235Not AvailablePositive1164476 - 116481412733.2
Hypothetical proteinEES38_05240Not AvailablePositive1164879 - 116528015383.3
Thiamine pyrophosphokinase, catalytic domainEES38_05245Not AvailablePositive1165280 - 11655168418.26

Displaying genes 1 – 10 of 4395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.