Vibrio viridaestus strain LJC006

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio viridaestus strain LJC006 is characterized by having a single replicon, which is an important trait for understanding its genomic architecture and stability. The complete genomic sequence of this strain is available under the accession number RJVQ00000000.1, providing a valuable resource for researchers interested in its genetic makeup and potential applications. This strain belongs to the Vibrio genus, which includes various species known for their ecological roles, particularly in marine environments. Vibrio species are often associated with aquatic organisms and are significant in nutrient cycling within their ecosystems. The presence of a single replicon may suggest certain genomic efficiencies that could influence the strain's adaptability and survival in changing environments. In the context of ecological interactions, Vibrio species, including V. viridaestus, can play critical roles in symbiotic relationships, pathogenicity, or as part of the microbial community in marine habitats. The genomic information encoded in the strain LJC006 can provide insights into the metabolic pathways and environmental adaptations that enable it to thrive in specific ecological niches. Understanding these traits can contribute to our knowledge of microbial biodiversity and the functional roles of Vibrio species in their respective ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio viridaestus
Strainstrain LJC006

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio viridaestus strain LJC006
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio viridaestus strain LJC006 scaffold_245, whole genome

Gene Summary

Adenine Count

1364069 bp

Thymine Count

1374677 bp

Guanine Count

999886 bp

Cytosine Count

973698 bp

Genome Length

4729331 bp

Protein-coding Genes

4249 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ubiquinol oxidase subunit iiEES38_03080Not AvailableNegative671274 - 67223936077.5
yebc/pmpr family dna-binding transcriptional regulatorEES38_03085Not AvailableNegative672733 - 67345526331.9
duf3283 family proteinEES38_03090Not AvailableNegative673531 - 6737588895.57
hypothetical proteinEES38_03095Not AvailableNegative673919 - 6741197505.9
duf3346 domain-containing proteinEES38_03100Not AvailableNegative674520 - 67649674976.1
para family proteinEES38_03105Not AvailablePositive677720 - 67893745867.8
parb/repb/spo0j family partition proteinEES38_03110Not AvailablePositive678944 - 67991536240.6
spermidine/putrescine abc transporter substrate-binding proteinEES38_03115Not AvailableNegative679939 - 68097638926.3
trna(met) cytidine acetyltransferaseEES38_03120Not AvailablePositive681124 - 68315775675.6
duf342 domain-containing proteinEES38_03125Not AvailablePositive683343 - 68502560638.6

Displaying genes 671 – 680 of 4395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.