Vibrio viridaestus strain LJC006

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio viridaestus strain LJC006 is characterized by having a single replicon, which is an important trait for understanding its genomic architecture and stability. The complete genomic sequence of this strain is available under the accession number RJVQ00000000.1, providing a valuable resource for researchers interested in its genetic makeup and potential applications. This strain belongs to the Vibrio genus, which includes various species known for their ecological roles, particularly in marine environments. Vibrio species are often associated with aquatic organisms and are significant in nutrient cycling within their ecosystems. The presence of a single replicon may suggest certain genomic efficiencies that could influence the strain's adaptability and survival in changing environments. In the context of ecological interactions, Vibrio species, including V. viridaestus, can play critical roles in symbiotic relationships, pathogenicity, or as part of the microbial community in marine habitats. The genomic information encoded in the strain LJC006 can provide insights into the metabolic pathways and environmental adaptations that enable it to thrive in specific ecological niches. Understanding these traits can contribute to our knowledge of microbial biodiversity and the functional roles of Vibrio species in their respective ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio viridaestus
Strainstrain LJC006

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio viridaestus strain LJC006
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio viridaestus strain LJC006 scaffold_245, whole genome

Gene Summary

Adenine Count

1364069 bp

Thymine Count

1374677 bp

Guanine Count

999886 bp

Cytosine Count

973698 bp

Genome Length

4729331 bp

Protein-coding Genes

4249 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphate abc transporter permease subunit pstcEES38_02430Not AvailableNegative515057 - 51600433327.0
phosphate abc transporter substrate-binding proteinEES38_02435Not AvailableNegative516103 - 51692428690.2
methyl-accepting chemotaxis proteinEES38_02440Not AvailablePositive517270 - 51891659488.5
dead/deah box helicaseEES38_02445Not AvailableNegative518952 - 52028650141.8
hypothetical proteinEES38_02450Not AvailablePositive520514 - 5207809398.9
lysm peptidoglycan-binding domain-containing proteinEES38_02455Not AvailableNegative520840 - 52171532273.8
deoxyribodipyrimidine photo-lyaseEES38_02460Not AvailableNegative521736 - 52315154935.0
merr family transcriptional regulatorEES38_02465Not AvailableNegative523148 - 52396330660.0
duf1722 domain-containing proteinEES38_02470Not AvailableNegative523953 - 52490636548.4
hypothetical proteinEES38_02475Not AvailablePositive525246 - 52672156909.1

Displaying genes 541 – 550 of 4395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.