Lonsdalea populi strain L6_4B 48

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Lonsdalea

Description

Lonsdalea populi strain L6_4B 48 is a Gram-negative bacterium characterized by its rod-shaped morphology. It is mesophilic, with an optimal growth temperature of 32°C, indicating that it thrives in moderate temperature environments. This trait suggests that L6_4B 48 is well-suited for habitats that experience typical environmental temperatures, which may include various soil and plant-associated ecosystems. The genetic makeup of Lonsdalea populi strain L6_4B 48 is defined by a single replicon, which may indicate a streamlined genomic organization suited for its ecological niche. The strain is cataloged under the accession number RJUJ00000000.1, providing a reference for genomic studies and further analysis within microbiological databases. The ecological significance of Lonsdalea populi, including strain L6_4B 48, can be highlighted by its association with poplar trees, suggesting a role in the microbial community interacting with plant health and soil dynamics. The understanding of such microorganisms can contribute to insights regarding nutrient cycling and plant-microbe interactions in forest ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusLonsdalea
SpeciesLonsdalea populi
Strainstrain L6_4B 48

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lonsdalea populi strain L6_4B 48, whole genome shotgun sequence.

Gene Summary

Adenine Count

821858 bp

Thymine Count

826786 bp

Guanine Count

1028989 bp

Cytosine Count

1014783 bp

Genome Length

3696027 bp

Protein-coding Genes

3128 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinEC392_05625Not AvailableNegative1293736 - 129487240571.6
dna polymerase iiEC392_05630Not AvailablePositive1295295 - 129767090722.3
rna polymerase-associated protein rapaEC392_05635Not AvailablePositive1298086 - 1300992109459.0
bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rluaEC392_05640Not AvailablePositive1301061 - 130171424899.0
co-chaperone djlaEC392_05645Not AvailableNegative1301775 - 130266233150.0
lps assembly protein lptdEC392_05650Not AvailablePositive1302849 - 130520689096.6
peptidylprolyl isomerase suraEC392_05655Not AvailablePositive1305307 - 130660247565.8
4-hydroxythreonine-4-phosphate dehydrogenase pdxaEC392_05660Not AvailablePositive1306602 - 130760335739.4
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaEC392_05665Not AvailablePositive1307596 - 130841430682.9
co2+/mg2+ efflux protein apagEC392_05670Not AvailablePositive1308430 - 130880714152.9

Displaying genes 1101 – 1110 of 3211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.