Ralstonia pseudosolanacearum strain Tg03

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Ralstonia

Description

Ralstonia pseudosolanacearum strain Tg03 is characterized by possessing a single replicon and is known to infect Solanum lycopersicum, commonly referred to as tomato. This strain is particularly important within the context of agricultural microbiology due to its pathogenicity on a major crop species. The genomic data for R. pseudosolanacearum strain Tg03 is cataloged under the accession RJTL00000000.1. This accession number allows for easier reference and retrieval of genetic information related to this strain, which is crucial for researchers studying its biology and interactions with host plants. The significance of strain Tg03 lies in its relationship with tomatoes, a staple food crop worldwide. Understanding the pathogenic mechanisms and ecological interactions of this bacterium can provide insights into disease management strategies. Given that R. pseudosolanacearum is known for causing bacterial wilt in various solanaceous plants, including tomatoes, studying strain Tg03 can contribute to the development of resistant varieties and improved agricultural practices. In conclusion, Ralstonia pseudosolanacearum strain Tg03 exemplifies a specific interaction with its host, Solanum lycopersicum, which is pivotal for both ecological understanding and agricultural applications. The single replicon structure and the genomic accessibility through the referenced accession number further facilitate research focused on mitigating its impact on tomato cultivation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusRalstonia
SpeciesRalstonia pseudosolanacearum
Strainstrain Tg03

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ralstonia pseudosolanacearum strain Tg03 Scaffold181, whole genome

Gene Summary

Adenine Count

984789 bp

Thymine Count

986592 bp

Guanine Count

1984007 bp

Cytosine Count

1974778 bp

Genome Length

5943400 bp

Protein-coding Genes

5053 genes

Non-Coding Genes

173 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinEGA29_12870Not AvailablePositive2796085 - 279725441685.0
nad(p)-dependent oxidoreductaseEGA29_12875Not AvailablePositive2797268 - 279816430823.3
Trna-leuNot AvailableNot AvailablePositive2798239 - 2798323Not Available
tigr04255 family proteinEGA29_12885Not AvailablePositive2799161 - 280000931107.3
hypothetical proteinEGA29_12890Not AvailablePositive2800183 - 280058114285.9
type vi secretion system tip protein vgrgEGA29_12895Not AvailablePositive2801861 - 280383972857.3
ornithine carbamoyltransferaseEGA29_12900Not AvailableNegative2804008 - 280493435327.1
duf3579 domain-containing proteinEGA29_12905Not AvailablePositive2805296 - 280561911949.2
30s ribosomal protein s20EGA29_12910Not AvailableNegative2805753 - 28060199277.32
murein biosynthesis integral membrane protein murjEGA29_12915Not AvailablePositive2806318 - 280787155932.1

Displaying genes 2561 – 2570 of 5226 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.