Rufibacter immobilis strain MCC P1

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter immobilis strain MCC P1 is characterized by having a single replicon, which is indicative of its genomic structure. This strain has been assigned the accession number RJJE00000000.1, providing a reference for its genomic sequence in biological databases. The presence of a single replicon may suggest a streamlined genetic organization, which can be advantageous for certain ecological niches where efficiency in resource utilization is critical. This trait can play a significant role in the adaptability of the organism in various environments, potentially affecting its survival and competitive abilities. Overall, the genomic characteristics of Rufibacter immobilis strain MCC P1 highlight its potential significance in microbial ecology, particularly in environments where single replicon organisms may thrive due to their efficient metabolic pathways. Further research on this strain could provide insights into its ecological roles and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter immobilis
Strainstrain MCC P1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter immobilis strain MCC P1

Gene Summary

Adenine Count

1166278 bp

Thymine Count

1159045 bp

Guanine Count

1208711 bp

Cytosine Count

1238098 bp

Genome Length

4773115 bp

Protein-coding Genes

3939 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad-dependent succinate-semialdehyde dehydrogenaseEFA69_14000Not AvailableNegative3358823 - 336020249968.3
sigma-70 family rna polymerase sigma factorEFA69_14005Not AvailablePositive3360444 - 336097120210.5
anti-sigma factorEFA69_14010Not AvailablePositive3360974 - 336181330388.9
duf2064 domain-containing proteinEFA69_14015Not AvailablePositive3361951 - 336253220697.8
duf2461 domain-containing proteinEFA69_14020Not AvailablePositive3362670 - 336335926472.5
hypothetical proteinEFA69_14025Not AvailablePositive3363606 - 336449332750.6
amidohydrolase family proteinEFA69_14030Not AvailableNegative3364586 - 336583044131.1
phzf family phenazine biosynthesis proteinEFA69_14035Not AvailableNegative3365889 - 336681834991.4
Trna-leuNot AvailableNot AvailablePositive3367168 - 3367250Not Available
hypothetical proteinEFA69_14045Not AvailablePositive3367843 - 336832217638.8

Displaying genes 2781 – 2790 of 3988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.