Rufibacter immobilis strain MCC P1

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter immobilis strain MCC P1 is characterized by having a single replicon, which is indicative of its genomic structure. This strain has been assigned the accession number RJJE00000000.1, providing a reference for its genomic sequence in biological databases. The presence of a single replicon may suggest a streamlined genetic organization, which can be advantageous for certain ecological niches where efficiency in resource utilization is critical. This trait can play a significant role in the adaptability of the organism in various environments, potentially affecting its survival and competitive abilities. Overall, the genomic characteristics of Rufibacter immobilis strain MCC P1 highlight its potential significance in microbial ecology, particularly in environments where single replicon organisms may thrive due to their efficient metabolic pathways. Further research on this strain could provide insights into its ecological roles and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter immobilis
Strainstrain MCC P1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter immobilis strain MCC P1

Gene Summary

Adenine Count

1166278 bp

Thymine Count

1159045 bp

Guanine Count

1208711 bp

Cytosine Count

1238098 bp

Genome Length

4773115 bp

Protein-coding Genes

3939 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEFA69_10985Not AvailableNegative2624612 - 26248398018.69
hypothetical proteinEFA69_10990Not AvailablePositive2624989 - 262593336739.0
uracil-dna glycosylase family proteinEFA69_10995Not AvailablePositive2626163 - 262674121530.1
pyridoxal phosphate-dependent aminotransferaseEFA69_11000Not AvailablePositive2626793 - 262794142655.9
5'(3')-deoxyribonucleotidaseEFA69_11005Not AvailableNegative2628097 - 262860319752.6
amidohydrolaseEFA69_11010Not AvailablePositive2628751 - 262953630005.7
t9ss c-terminal target domain-containing proteinEFA69_11015Not AvailableNegative2629612 - 263184380803.1
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseEFA69_11020Not AvailablePositive2631882 - 263316847163.4
dtdp-4-dehydrorhamnose 3,5-epimeraseEFA69_11025Not AvailableNegative2633326 - 263386820023.8
glycosyltransferase family 1 proteinEFA69_11030Not AvailableNegative2633879 - 263500941642.7

Displaying genes 2181 – 2190 of 3988 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.