Rufibacter latericius strain R-22-1 c-1

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter latericius strain R-22-1 c-1 is characterized by having a single replicon, which is a noteworthy trait as it can influence the strain's stability and replication efficiency. The genome of this strain is cataloged under the accession number RJJD00000000.1, providing a reference point for further genomic studies and comparisons within the species. The single replicon suggests that Rufibacter latericius R-22-1 c-1 may exhibit streamlined genetic regulation, which can be advantageous in specific environmental conditions. This trait can reflect the strain's adaptation to its ecological niche, potentially allowing it to optimize its metabolic processes and resource utilization. Understanding the genomic characteristics of Rufibacter latericius R-22-1 c-1 can provide insights into its ecological role and interactions within microbial communities. The simplicity of having one replicon may also facilitate studies on gene expression and functional analyses, contributing to our comprehension of the strain's capabilities in various environments. Overall, the genomic framework indicated by the accession RJJD00000000.1 lays the groundwork for future research, which may enhance our knowledge of microbial diversity and its implications for ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter latericius
Strainstrain R-22-1 c-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter latericius strain R-22-1 c-1

Gene Summary

Adenine Count

1407807 bp

Thymine Count

1414610 bp

Guanine Count

1408023 bp

Cytosine Count

1440738 bp

Genome Length

5672702 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
anti-sigma factor antagonistEFB08_00015Not AvailableNegative1518 - 186512719.6
transcriptional repressorEFB08_00020Not AvailableNegative1855 - 233118497.1
23s ribosomal rnaNot AvailableNot AvailablePositive2357 - 5253Not Available
hypothetical proteinEFB08_00025Not AvailablePositive2796 - 365629874.4
5s ribosomal rnaNot AvailableNot AvailablePositive5343 - 5454Not Available
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseEFB08_00030Not AvailableNegative3829 - 603383817.9
Trna-leuNot AvailableNot AvailablePositive6184 - 6268Not Available
trigger factorEFB08_00040Not AvailablePositive6342 - 767050852.6
atp-dependent clp protease proteolytic subunitEFB08_00045Not AvailablePositive8088 - 878625885.2
atp-dependent clp protease atp-binding subunit clpxEFB08_00050Not AvailablePositive9248 - 1047745797.6

Displaying genes 31 – 40 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.