Rufibacter latericius strain R-22-1 c-1

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter latericius strain R-22-1 c-1 is characterized by having a single replicon, which is a noteworthy trait as it can influence the strain's stability and replication efficiency. The genome of this strain is cataloged under the accession number RJJD00000000.1, providing a reference point for further genomic studies and comparisons within the species. The single replicon suggests that Rufibacter latericius R-22-1 c-1 may exhibit streamlined genetic regulation, which can be advantageous in specific environmental conditions. This trait can reflect the strain's adaptation to its ecological niche, potentially allowing it to optimize its metabolic processes and resource utilization. Understanding the genomic characteristics of Rufibacter latericius R-22-1 c-1 can provide insights into its ecological role and interactions within microbial communities. The simplicity of having one replicon may also facilitate studies on gene expression and functional analyses, contributing to our comprehension of the strain's capabilities in various environments. Overall, the genomic framework indicated by the accession RJJD00000000.1 lays the groundwork for future research, which may enhance our knowledge of microbial diversity and its implications for ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter latericius
Strainstrain R-22-1 c-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter latericius strain R-22-1 c-1

Gene Summary

Adenine Count

1407807 bp

Thymine Count

1414610 bp

Guanine Count

1408023 bp

Cytosine Count

1440738 bp

Genome Length

5672702 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEFB08_21800Not AvailablePositive5317198 - 531768918309.8
sdr family oxidoreductaseEFB08_21805Not AvailableNegative5317940 - 531879429602.8
tyrosine--trna ligaseEFB08_21810Not AvailableNegative5319064 - 532028745467.2
hypothetical proteinEFB08_21815Not AvailableNegative5320607 - 53208589186.64
lysr family transcriptional regulatorEFB08_21820Not AvailablePositive5320950 - 532185534620.7
hypothetical proteinEFB08_21825Not AvailableNegative5322057 - 532263222136.8
nucleotidyltransferase domain-containing proteinEFB08_21830Not AvailableNegative5322645 - 532342730117.3
hypothetical proteinEFB08_21835Not AvailableNegative5323501 - 532377910075.2
tir domain-containing proteinEFB08_21840Not AvailableNegative5323836 - 532624493106.9
toll/interleukin-1 receptor domain-containing proteinEFB08_21845Not AvailableNegative5326222 - 532666516929.6

Displaying genes 4331 – 4340 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.