Rufibacter latericius strain R-22-1 c-1

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter latericius strain R-22-1 c-1 is characterized by having a single replicon, which is a noteworthy trait as it can influence the strain's stability and replication efficiency. The genome of this strain is cataloged under the accession number RJJD00000000.1, providing a reference point for further genomic studies and comparisons within the species. The single replicon suggests that Rufibacter latericius R-22-1 c-1 may exhibit streamlined genetic regulation, which can be advantageous in specific environmental conditions. This trait can reflect the strain's adaptation to its ecological niche, potentially allowing it to optimize its metabolic processes and resource utilization. Understanding the genomic characteristics of Rufibacter latericius R-22-1 c-1 can provide insights into its ecological role and interactions within microbial communities. The simplicity of having one replicon may also facilitate studies on gene expression and functional analyses, contributing to our comprehension of the strain's capabilities in various environments. Overall, the genomic framework indicated by the accession RJJD00000000.1 lays the groundwork for future research, which may enhance our knowledge of microbial diversity and its implications for ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter latericius
Strainstrain R-22-1 c-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter latericius strain R-22-1 c-1

Gene Summary

Adenine Count

1407807 bp

Thymine Count

1414610 bp

Guanine Count

1408023 bp

Cytosine Count

1440738 bp

Genome Length

5672702 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylmalonyl-coa epimeraseEFB08_12360Not AvailableNegative3099407 - 309980814721.7
iscs subfamily cysteine desulfuraseEFB08_12365Not AvailablePositive3099931 - 310114244269.0
fe-s cluster assembly scaffold iscuEFB08_12370Not AvailablePositive3101265 - 310167814784.6
hypothetical proteinEFB08_12375Not AvailablePositive3101694 - 310210115921.9
iron-sulfur cluster assembly accessory proteinEFB08_12380Not AvailablePositive3102122 - 310244811819.8
hypothetical proteinEFB08_12385Not AvailableNegative3102516 - 31027227781.33
nuclear transport factor 2 family proteinEFB08_12390Not AvailableNegative3102871 - 310333217262.4
hypothetical proteinEFB08_12395Not AvailableNegative3103466 - 310399918704.2
atp-binding cassette family proteinEFB08_12400Not AvailablePositive3104854 - 3108618144039.0
snase-like nucleaseEFB08_12405Not AvailableNegative3108755 - 310952528575.9

Displaying genes 2461 – 2470 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.