Rufibacter latericius strain R-22-1 c-1

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Rufibacter

Description

Rufibacter latericius strain R-22-1 c-1 is characterized by having a single replicon, which is a noteworthy trait as it can influence the strain's stability and replication efficiency. The genome of this strain is cataloged under the accession number RJJD00000000.1, providing a reference point for further genomic studies and comparisons within the species. The single replicon suggests that Rufibacter latericius R-22-1 c-1 may exhibit streamlined genetic regulation, which can be advantageous in specific environmental conditions. This trait can reflect the strain's adaptation to its ecological niche, potentially allowing it to optimize its metabolic processes and resource utilization. Understanding the genomic characteristics of Rufibacter latericius R-22-1 c-1 can provide insights into its ecological role and interactions within microbial communities. The simplicity of having one replicon may also facilitate studies on gene expression and functional analyses, contributing to our comprehension of the strain's capabilities in various environments. Overall, the genomic framework indicated by the accession RJJD00000000.1 lays the groundwork for future research, which may enhance our knowledge of microbial diversity and its implications for ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusRufibacter
SpeciesRufibacter latericius
Strainstrain R-22-1 c-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rufibacter latericius strain R-22-1 c-1

Gene Summary

Adenine Count

1407807 bp

Thymine Count

1414610 bp

Guanine Count

1408023 bp

Cytosine Count

1440738 bp

Genome Length

5672702 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyltransferaseEFB08_06025Not AvailableNegative1530982 - 153277869433.7
thioesteraseEFB08_06030Not AvailablePositive1533214 - 153364516297.7
m20/m25/m40 family metallo-hydrolaseEFB08_06035Not AvailablePositive1533754 - 153534658304.3
m1 family peptidaseEFB08_06040Not AvailableNegative1535445 - 153710063151.9
membrane or secreted proteinEFB08_06045Not AvailableNegative1537236 - 153982796831.4
glycoside hydrolase family 32 proteinEFB08_06050Not AvailableNegative1540069 - 154158056561.9
duf4975 domain-containing proteinEFB08_06055Not AvailableNegative1541777 - 154333356831.4
duf4960 domain-containing proteinEFB08_06060Not AvailableNegative1543616 - 154502850527.3
hypothetical proteinEFB08_06065Not AvailableNegative1545057 - 154702474101.9
ragb/susd family nutrient uptake outer membrane proteinEFB08_06070Not AvailableNegative1547158 - 154885564699.0

Displaying genes 1231 – 1240 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.