Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain L889 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1386626 bp
Thymine Count
1382639 bp
Guanine Count
1409391 bp
Cytosine Count
1412408 bp
Genome Length
5605530 bp
Protein-coding Genes
5216 genes
Non-Coding Genes
253 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deda family protein | D9K54_16230 | Not Available | Positive | 3251503 - 3252267 | 28220.7 |
| thiamine abc transporter atp-binding protein thiq | D9K54_16235 | Not Available | Negative | 3252354 - 3253052 | 25030.7 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | D9K54_16240 | Not Available | Negative | 3253036 - 3254646 | 59351.5 |
| thiamine-binding periplasmic protein | D9K54_16245 | Not Available | Negative | 3254622 - 3255605 | 36165.2 |
| type iii effector | D9K54_16250 | Not Available | Positive | 3255977 - 3256546 | 21465.3 |
| transcriptional regulator sgrr | D9K54_16255 | Not Available | Negative | 3256776 - 3258434 | 64087.8 |
| glucose uptake inhibitor sgrt | D9K54_16260 | Not Available | Positive | 3258523 - 3258654 | 5338.42 |
| mfs transporter | D9K54_16265 | Not Available | Positive | 3258756 - 3259934 | 42738.9 |
| 3-isopropylmalate dehydratase small subunit | D9K54_16270 | Not Available | Negative | 3259983 - 3260588 | 22488.7 |
| 3-isopropylmalate dehydratase large subunit | D9K54_16275 | Not Available | Negative | 3260599 - 3261999 | 49884.7 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





