Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain L889 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1386626 bp
Thymine Count
1382639 bp
Guanine Count
1409391 bp
Cytosine Count
1412408 bp
Genome Length
5605530 bp
Protein-coding Genes
5216 genes
Non-Coding Genes
253 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type 1 fimbrial protein | D9K54_15455 | Not Available | Positive | 3084787 - 3085290 | 17385.4 |
| fimbrial protein | D9K54_15460 | Not Available | Positive | 3085310 - 3086212 | 31447.1 |
| gluconate transporter | D9K54_15465 | Not Available | Negative | 3086387 - 3087730 | 47141.0 |
| mannonate dehydratase | D9K54_15470 | Not Available | Positive | 3088070 - 3089254 | 44826.5 |
| fructuronate reductase | D9K54_15475 | Not Available | Positive | 3089335 - 3090795 | 53659.3 |
| hypothetical protein | D9K54_15480 | Not Available | Negative | 3090817 - 3091011 | 6777.36 |
| uxu operon transcriptional regulator | D9K54_15485 | Not Available | Positive | 3091010 - 3091783 | 29291.8 |
| duf2686 family protein | D9K54_15490 | Not Available | Negative | 3091924 - 3092754 | 30826.8 |
| irad leader peptide | D9K54_15495 | Not Available | Positive | 3093347 - 3093430 | 3016.48 |
| anti-adapter protein irad | D9K54_15500 | Not Available | Positive | 3093427 - 3093819 | 14792.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





