Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain L889 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1386626 bp
Thymine Count
1382639 bp
Guanine Count
1409391 bp
Cytosine Count
1412408 bp
Genome Length
5605530 bp
Protein-coding Genes
5216 genes
Non-Coding Genes
253 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv toxin-antitoxin system yeeu family antitoxin | D9K54_15345 | Not Available | Positive | 3059623 - 3059822 | 7494.67 |
| type iv toxin-antitoxin system yeeu family antitoxin | D9K54_15350 | Not Available | Positive | 3059823 - 3059906 | 2997.59 |
| toxin | D9K54_15355 | Not Available | Positive | 3059996 - 3060373 | 14217.0 |
| hypothetical protein | D9K54_15360 | Not Available | Positive | 3060370 - 3060858 | 18031.4 |
| duf957 domain-containing protein | D9K54_15365 | Not Available | Positive | 3060878 - 3061075 | 7426.84 |
| dead/deah box helicase | D9K54_15375 | Not Available | Positive | 3061959 - 3064850 | 111080.0 |
| type iii restriction endonuclease subunit r | D9K54_15385 | Not Available | Positive | 3067992 - 3071372 | 129971.0 |
| hypothetical protein | D9K54_15390 | Not Available | Negative | 3071419 - 3071721 | 12007.3 |
| hnh endonuclease | D9K54_15395 | Not Available | Negative | 3072034 - 3072906 | 33184.6 |
| hnh endonuclease | D9K54_15400 | Not Available | Positive | 3072988 - 3073110 | 4554.74 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





