Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain L889 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1386626 bp
Thymine Count
1382639 bp
Guanine Count
1409391 bp
Cytosine Count
1412408 bp
Genome Length
5605530 bp
Protein-coding Genes
5216 genes
Non-Coding Genes
253 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein trbf | D9K54_14710 | Not Available | Positive | 2950570 - 2950983 | 15920.3 |
| conjugal transfer protein trah | D9K54_14715 | Not Available | Positive | 2950980 - 2952356 | 50352.3 |
| conjugal transfer protein trag | D9K54_14720 | Not Available | Positive | 2952353 - 2955175 | 102681.0 |
| entry exclusion protein | D9K54_14725 | Not Available | Positive | 2955191 - 2955688 | 19076.2 |
| complement resistance protein trat | D9K54_14730 | Not Available | Positive | 2955720 - 2956451 | 25932.2 |
| hypothetical protein | D9K54_14735 | Not Available | Negative | 2956378 - 2956593 | 8214.16 |
| type iv conjugative transfer system coupling protein trad | D9K54_14740 | Not Available | Positive | 2956704 - 2958857 | 81488.6 |
| trna(fmet)-specific endonuclease vapc | D9K54_14745 | Not Available | Negative | 2958866 - 2959264 | 14902.1 |
| antitoxin | D9K54_14750 | Not Available | Negative | 2959264 - 2959494 | 8728.3 |
| conjugative transfer relaxase/helicase trai | D9K54_14755 | Not Available | Positive | 2959573 - 2964843 | 192021.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





