Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain L889 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1386626 bp
Thymine Count
1382639 bp
Guanine Count
1409391 bp
Cytosine Count
1412408 bp
Genome Length
5605530 bp
Protein-coding Genes
5216 genes
Non-Coding Genes
253 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shufflon protein b | D9K54_14300 | Not Available | Positive | 2884707 - 2885021 | 11066.0 |
| shufflon protein d' | D9K54_14305 | Not Available | Negative | 2885310 - 2885528 | 7988.18 |
| pilus assembly protein pilv | D9K54_14310 | Not Available | Positive | 2885495 - 2885688 | 7335.86 |
| shufflon protein c' | D9K54_14315 | Not Available | Positive | 2885689 - 2885840 | 5350.33 |
| shufflon protein c | D9K54_14320 | Not Available | Negative | 2885837 - 2886109 | 9925.51 |
| integrase | D9K54_14325 | Not Available | Positive | 2886152 - 2887306 | 44230.6 |
| conjugal transfer protein trae | D9K54_14330 | Not Available | Positive | 2887457 - 2888281 | 30863.3 |
| type ix secretion system membrane protein porp/sprf | D9K54_14335 | Not Available | Positive | 2888367 - 2889569 | 43212.1 |
| histidine phosphatase family protein | D9K54_14340 | Not Available | Positive | 2889629 - 2890213 | 21959.4 |
| hypothetical protein | D9K54_14345 | Not Available | Positive | 2890608 - 2891066 | 16979.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





