Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain L889 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1386626 bp
Thymine Count
1382639 bp
Guanine Count
1409391 bp
Cytosine Count
1412408 bp
Genome Length
5605530 bp
Protein-coding Genes
5216 genes
Non-Coding Genes
253 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtpase family protein | D9K54_12065 | Not Available | Positive | 2480754 - 2481352 | 22392.7 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase | D9K54_12075 | Not Available | Positive | 2482190 - 2483779 | 57361.4 |
| phosphoribosylamine--glycine ligase | D9K54_12080 | Not Available | Positive | 2483791 - 2485080 | 45957.0 |
| two-component system response regulator zrar | D9K54_12085 | Not Available | Negative | 2485077 - 2486402 | 48341.3 |
| two-component system sensor histidine kinase zras | D9K54_12090 | Not Available | Negative | 2486399 - 2487775 | 50520.1 |
| zinc resistance-associated protein | D9K54_12095 | Not Available | Positive | 2488013 - 2488438 | 15200.3 |
| duf1481 domain-containing protein | D9K54_12100 | Not Available | Negative | 2488440 - 2489135 | 26352.9 |
| dna-binding protein hu-alpha | D9K54_12105 | Not Available | Negative | 2489148 - 2489420 | 9535.51 |
| duf416 family protein | D9K54_12110 | Not Available | Negative | 2489607 - 2490197 | 22613.9 |
| deoxyribonuclease v | D9K54_12115 | Not Available | Negative | 2490240 - 2490911 | 24692.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





