Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain L889 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1386626 bp
Thymine Count
1382639 bp
Guanine Count
1409391 bp
Cytosine Count
1412408 bp
Genome Length
5605530 bp
Protein-coding Genes
5216 genes
Non-Coding Genes
253 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shet2/espl2 family type iii secretion system effector toxin | D9K54_05180 | Not Available | Negative | 1064466 - 1066364 | 70881.1 |
| threonine--trna ligase | D9K54_05185 | Not Available | Positive | 1066887 - 1068815 | 74004.4 |
| translation initiation factor if-3 | D9K54_05190 | Not Available | Positive | 1068819 - 1069361 | 20565.2 |
| 50s ribosomal protein l35 | D9K54_05195 | Not Available | Positive | 1069458 - 1069655 | 7289.38 |
| 50s ribosomal protein l20 | D9K54_05200 | Not Available | Positive | 1069708 - 1070064 | 13497.7 |
| phest operon leader peptide phem | D9K54_05205 | Not Available | Positive | 1070191 - 1070325 | 5349.58 |
| phenylalanine--trna ligase subunit alpha | D9K54_05210 | Not Available | Positive | 1070514 - 1071497 | 36803.9 |
| phenylalanine--trna ligase subunit beta | D9K54_05215 | Not Available | Positive | 1071512 - 1073899 | 87417.2 |
| integration host factor subunit alpha | D9K54_05220 | Not Available | Positive | 1073904 - 1074203 | 11354.6 |
| vitamin b12 import system permease btuc | D9K54_05225 | Not Available | Positive | 1074304 - 1075284 | 34909.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





