Atlantibacter subterranea strain AS_373

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Atlantibacter

Description

Atlantibacter subterranea strain AS_373 is characterized as a Gram-negative bacterium, indicating the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is a typical feature of this group. This strain is notable for possessing a single replicon, which suggests a streamlined genomic structure that may contribute to its adaptability and survival in various environments. The genomic information for Atlantibacter subterranea AS_373 can be found under the accession number RHXB00000000.1. This identifier allows for the retrieval of the complete genomic sequence and further analysis of its genetic makeup, which is crucial for understanding its biological functions and potential applications. The ecological significance of Atlantibacter subterranea strain AS_373 may be linked to its metabolic capabilities, which are common among Gram-negative bacteria. These organisms often play critical roles in nutrient cycling and can interact with various environmental factors, including soil composition and microbial community dynamics. While specific metabolic pathways for AS_373 are not provided, the general characteristics of Gram-negative bacteria suggest that it may contribute to the degradation of organic matter and the transformation of nutrients within its habitat. This positions Atlantibacter subterranea strain AS_373 as a potentially important player in its ecosystem, contributing to ecological balance and nutrient availability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusAtlantibacter
SpeciesAtlantibacter subterraneus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Atlantibacter subterranea strain AS_373
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Atlantibacter subterranea strain AS_373

Gene Summary

Adenine Count

1075638 bp

Thymine Count

1070476 bp

Guanine Count

1315964 bp

Cytosine Count

1330752 bp

Genome Length

4792855 bp

Protein-coding Genes

4273 genes

Non-Coding Genes

322 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase factor sigma-54EGT71_16065Not AvailableNegative3329529 - 333096253987.6
lipopolysaccharide abc transporter atp-binding proteinEGT71_16070Not AvailableNegative3331130 - 333185526820.3
lipopolysaccharide abc transporter substrate-binding protein lptaEGT71_16075Not AvailableNegative3331862 - 333241920091.0
lps export abc transporter periplasmic protein lptcEGT71_16080Not AvailableNegative3332388 - 333296321444.6
3-deoxy-manno-octulosonate-8-phosphatase kdscEGT71_16085Not AvailableNegative3332960 - 333352620319.7
arabinose-5-phosphate isomerase kdsdEGT71_16090Not AvailableNegative3333544 - 333453034969.1
calcium/sodium antiporterEGT71_16095Not AvailableNegative3334544 - 333552134553.8
phospholipid abc transporter atp-binding protein mlafEGT71_16100Not AvailablePositive3335753 - 333656829490.0
lipid asymmetry maintenance abc transporter permease subunit mlaeEGT71_16105Not AvailablePositive3336576 - 333735827825.0
outer membrane lipid asymmetry maintenance protein mladEGT71_16110Not AvailablePositive3337362 - 333791319878.8

Displaying genes 3251 – 3260 of 4595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

166 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 166 metabolites

Health Effects

No health effects information available for this bacterium.