Pseudomonas sp. p106

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. p106 is characterized by having a single replicon, which may influence its genetic stability and replication dynamics. This bacterium is cataloged under the accession number RHQR00000000.1, indicating its genetic sequence has been documented in a public database, allowing for further study and comparison with other strains. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse environments, including soil, water, and as opportunistic pathogens in plants and animals. The single replicon structure of Pseudomonas sp. p106 could reflect adaptations to its ecological niche, potentially affecting its growth and survival strategies in various habitats. Understanding the genomic characteristics of Pseudomonas sp. p106, particularly its single-replicon feature, can provide insights into its ecological roles and potential applications in biotechnological contexts. For example, Pseudomonas species are often explored for their capabilities in bioremediation and biocontrol, which are crucial for environmental management and agriculture. The genetic information associated with accession RHQR00000000.1 may facilitate research into the specific traits of Pseudomonas sp. p106, ultimately contributing to a greater understanding of its ecological significance and potential utility in sustainable practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. p106
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. p106
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. p106 NODE_53_length_512_cov_19.0046, whole genome

Gene Summary

Adenine Count

1059575 bp

Thymine Count

1079814 bp

Guanine Count

1758154 bp

Cytosine Count

1719588 bp

Genome Length

5618726 bp

Protein-coding Genes

4979 genes

Non-Coding Genes

220 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
penicillin-binding protein 2EGJ09_07030Not AvailablePositive1429491 - 143138070277.4
rod shape-determining protein rodaEGJ09_07035Not AvailablePositive1431377 - 143252241909.9
lytic murein transglycosylase bEGJ09_07040Not AvailablePositive1432540 - 143355037581.4
septal ring lytic transglycosylase rlpa family proteinEGJ09_07045Not AvailablePositive1433550 - 143454835932.7
d-alanyl-d-alanine carboxypeptidaseEGJ09_07050Not AvailablePositive1434852 - 143601242256.8
duf493 domain-containing proteinEGJ09_07055Not AvailablePositive1436085 - 143636010077.2
lipoyl(octanoyl) transferase lipbEGJ09_07060Not AvailablePositive1436360 - 143700723589.5
lipoyl synthaseEGJ09_07065Not AvailablePositive1437010 - 143802637962.9
ld-carboxypeptidaseEGJ09_07070Not AvailablePositive1438113 - 143905133094.3
lytic murein transglycosylaseEGJ09_07075Not AvailableNegative1439160 - 144047647936.0

Displaying genes 1451 – 1460 of 5199 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.