Empedobacter falsenii strain WF_348

aerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Empedobacter

Description

Empedobacter falsenii strain WF_348 is an aerobic bacterium characterized by its ability to thrive in environments with oxygen. This strain is distinguished by having a single replicon, which indicates it possesses a single circular chromosome. The genomic information for this strain is cataloged under the accession number RHPO00000000.1, providing a reference for further genetic studies and comparisons within the genus Empedobacter. The aerobic nature of Empedobacter falsenii strain WF_348 suggests it plays a role in environments where oxygen is present, potentially participating in processes such as organic matter decomposition or nutrient cycling. Its single replicon may also imply a streamlined genomic organization, which can be advantageous for its adaptability and efficiency in utilizing available resources in its ecological niche. Understanding the traits of Empedobacter falsenii strain WF_348 contributes to the broader knowledge of microbial diversity and functional roles within ecosystems. Its aerobic metabolism may help in biogeochemical cycles, particularly in environments where aerobic conditions prevail. Further studies on this strain could uncover its specific contributions to ecological processes and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusEmpedobacter
SpeciesEmpedobacter falsenii
Strainstrain WF_348

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Empedobacter falsenii strain WF_348

Gene Summary

Adenine Count

1088596 bp

Thymine Count

1104292 bp

Guanine Count

507432 bp

Cytosine Count

501722 bp

Genome Length

3202065 bp

Protein-coding Genes

2973 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
voc family proteinEGI89_10180Not AvailableNegative2097989 - 209841416134.3
hypothetical proteinEGI89_10185Not AvailablePositive2098516 - 209976648009.9
tonb-dependent receptorEGI89_10190Not AvailablePositive2099864 - 210227291496.0
rida family proteinEGI89_10195Not AvailablePositive2102494 - 21026465713.02
yggs family pyridoxal phosphate-dependent enzymeEGI89_10200Not AvailableNegative2102733 - 210339225227.8
duf1015 domain-containing proteinEGI89_10205Not AvailableNegative2103396 - 210464348732.0
3-phosphoglycerate dehydrogenaseEGI89_10210Not AvailableNegative2104677 - 210562734191.1
3-phosphoserine/phosphohydroxythreonine transaminaseEGI89_10215Not AvailableNegative2105715 - 210678539180.8
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeEGI89_10220Not AvailableNegative2106948 - 210820746748.4
pyridoxal-phosphate dependent enzymeEGI89_10225Not AvailableNegative2108301 - 210933837923.1

Displaying genes 2021 – 2030 of 3070 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.