Nocardia seriolae strain HSY-NS02

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia seriolae strain HSY-NS02 is characterized by the presence of flagella, which may contribute to its motility in aquatic environments. This strain possesses a single replicon, indicating a streamlined genomic structure that could influence its replication and stability within hosts. It has been identified in association with the Japanese eel, Anguilla japonica, suggesting a specific host interaction that could be significant for understanding its ecological role. The accession number for Nocardia seriolae strain HSY-NS02 is RCNK00000000.1, which allows for further genomic and taxonomic studies. The relationship between this strain and its host may offer insights into the dynamics of microbial communities in aquatic ecosystems, particularly in how Nocardia species can impact fish health and disease. Understanding these interactions is crucial for managing fish populations and maintaining biodiversity in their habitats, especially considering the potential implications for aquaculture and wild fishery practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia seriolae
Strainstrain HSY-NS02

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Anguilla japonica
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia seriolae strain HSY-NS02 Scaffold317, whole genome

Gene Summary

Adenine Count

1227508 bp

Thymine Count

1238435 bp

Guanine Count

2658695 bp

Cytosine Count

2637537 bp

Genome Length

7762195 bp

Protein-coding Genes

6841 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methylated-dna--[protein]-cysteine s-methyltransferaseD6158_20885Not AvailableNegative4535412 - 453593018169.7
dna-3-methyladenine glycosylase 2 family proteinD6158_20890Not AvailableNegative4535927 - 453750156534.1
ybdd/yjix family proteinD6158_20895Not AvailableNegative4537571 - 45378109009.71
carbon starvation protein aD6158_20900Not AvailableNegative4537815 - 454014582907.8
sugar abc transporter substrate-binding proteinD6158_20905Not AvailablePositive4540377 - 454177150698.4
sugar abc transporter permeaseD6158_20910Not AvailablePositive4541768 - 454266132642.5
carbohydrate abc transporter permeaseD6158_20915Not AvailablePositive4542685 - 454348229666.0
arac family transcriptional regulatorD6158_20920Not AvailableNegative4543468 - 454439733229.9
sdr family nad(p)-dependent oxidoreductaseD6158_20925Not AvailablePositive4544517 - 454524224693.7
nuclear transport factor 2 family proteinD6158_20930Not AvailablePositive4545246 - 454566514990.1

Displaying genes 3961 – 3970 of 6910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.