Nocardia seriolae strain HSY-NS02

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia seriolae strain HSY-NS02 is characterized by the presence of flagella, which may contribute to its motility in aquatic environments. This strain possesses a single replicon, indicating a streamlined genomic structure that could influence its replication and stability within hosts. It has been identified in association with the Japanese eel, Anguilla japonica, suggesting a specific host interaction that could be significant for understanding its ecological role. The accession number for Nocardia seriolae strain HSY-NS02 is RCNK00000000.1, which allows for further genomic and taxonomic studies. The relationship between this strain and its host may offer insights into the dynamics of microbial communities in aquatic ecosystems, particularly in how Nocardia species can impact fish health and disease. Understanding these interactions is crucial for managing fish populations and maintaining biodiversity in their habitats, especially considering the potential implications for aquaculture and wild fishery practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia seriolae
Strainstrain HSY-NS02

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Anguilla japonica
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia seriolae strain HSY-NS02 Scaffold317, whole genome

Gene Summary

Adenine Count

1227508 bp

Thymine Count

1238435 bp

Guanine Count

2658695 bp

Cytosine Count

2637537 bp

Genome Length

7762195 bp

Protein-coding Genes

6841 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cation-transporting p-type atpaseD6158_20410Not AvailablePositive4438541 - 444115991165.5
cbs domain-containing proteinD6158_20415Not AvailablePositive4441294 - 444200725568.9
duf385 domain-containing proteinD6158_20420Not AvailablePositive4442049 - 444262721321.5
abc transporter atp-binding proteinD6158_20425Not AvailablePositive4442741 - 444365232773.3
abc transporter permeaseD6158_20430Not AvailablePositive4443649 - 444439526441.5
hypothetical proteinD6158_20435Not AvailableNegative4444502 - 44446846464.8
duf385 domain-containing proteinD6158_20440Not AvailableNegative4444956 - 444571127182.8
flavodoxinD6158_20445Not AvailablePositive4445986 - 444654019940.9
hypothetical proteinD6158_20450Not AvailablePositive4446641 - 444865673795.9
universal stress proteinD6158_20455Not AvailableNegative4448758 - 444942923481.4

Displaying genes 3871 – 3880 of 6910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.