Nocardia seriolae strain HSY-NS02

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia seriolae strain HSY-NS02 is characterized by the presence of flagella, which may contribute to its motility in aquatic environments. This strain possesses a single replicon, indicating a streamlined genomic structure that could influence its replication and stability within hosts. It has been identified in association with the Japanese eel, Anguilla japonica, suggesting a specific host interaction that could be significant for understanding its ecological role. The accession number for Nocardia seriolae strain HSY-NS02 is RCNK00000000.1, which allows for further genomic and taxonomic studies. The relationship between this strain and its host may offer insights into the dynamics of microbial communities in aquatic ecosystems, particularly in how Nocardia species can impact fish health and disease. Understanding these interactions is crucial for managing fish populations and maintaining biodiversity in their habitats, especially considering the potential implications for aquaculture and wild fishery practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia seriolae
Strainstrain HSY-NS02

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Anguilla japonica
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia seriolae strain HSY-NS02 Scaffold317, whole genome

Gene Summary

Adenine Count

1227508 bp

Thymine Count

1238435 bp

Guanine Count

2658695 bp

Cytosine Count

2637537 bp

Genome Length

7762195 bp

Protein-coding Genes

6841 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinD6158_18680Not AvailableNegative4083920 - 408434814339.4
duf4192 domain-containing proteinD6158_18685Not AvailablePositive4084548 - 408577142853.8
udp-glucose 4-epimerase galeD6158_18690Not AvailableNegative4085815 - 408680134481.7
metal-dependent transcriptional regulatorD6158_18695Not AvailableNegative4086805 - 408749125405.4
is630 family transposaseD6158_18700Not AvailableNegative4087724 - 40878484673.43
hypothetical proteinD6158_18705Not AvailableNegative4087938 - 408837816543.4
hypothetical proteinD6158_18710Not AvailableNegative4089120 - 409004932094.1
xre family transcriptional regulatorD6158_18715Not AvailableNegative4090170 - 409096729360.4
hypothetical proteinD6158_18720Not AvailablePositive4091043 - 409205036328.2
hypothetical proteinD6158_18725Not AvailablePositive4092111 - 409312135854.6

Displaying genes 3541 – 3550 of 6910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.