Nocardia seriolae strain HSY-NS02

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia seriolae strain HSY-NS02 is characterized by the presence of flagella, which may contribute to its motility in aquatic environments. This strain possesses a single replicon, indicating a streamlined genomic structure that could influence its replication and stability within hosts. It has been identified in association with the Japanese eel, Anguilla japonica, suggesting a specific host interaction that could be significant for understanding its ecological role. The accession number for Nocardia seriolae strain HSY-NS02 is RCNK00000000.1, which allows for further genomic and taxonomic studies. The relationship between this strain and its host may offer insights into the dynamics of microbial communities in aquatic ecosystems, particularly in how Nocardia species can impact fish health and disease. Understanding these interactions is crucial for managing fish populations and maintaining biodiversity in their habitats, especially considering the potential implications for aquaculture and wild fishery practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia seriolae
Strainstrain HSY-NS02

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Anguilla japonica
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia seriolae strain HSY-NS02 Scaffold317, whole genome

Gene Summary

Adenine Count

1227508 bp

Thymine Count

1238435 bp

Guanine Count

2658695 bp

Cytosine Count

2637537 bp

Genome Length

7762195 bp

Protein-coding Genes

6841 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sugar abc transporter atp-binding proteinD6158_06955Not AvailablePositive1517013 - 151778627186.0
abc transporter permeaseD6158_06960Not AvailablePositive1517825 - 151924648174.9
rok family proteinD6158_06965Not AvailablePositive1519368 - 152051940158.9
pig-l family deacetylaseD6158_06970Not AvailablePositive1520584 - 152129725694.1
glycosyl transferaseD6158_06975Not AvailablePositive1521560 - 152270839672.6
duf3046 domain-containing proteinD6158_06980Not AvailablePositive1522752 - 15229437114.5
zf-cgnr multi-domain proteinD6158_06985Not AvailableNegative1522948 - 152346919001.7
voc family proteinD6158_06990Not AvailablePositive1523623 - 152407515734.4
pyridoxamine 5'-phosphate oxidase family proteinD6158_06995Not AvailablePositive1524196 - 152503830006.7
nuclear transport factor 2 family proteinD6158_07000Not AvailablePositive1525059 - 152551117767.6

Displaying genes 1331 – 1340 of 6910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.