Nocardia seriolae strain HSY-NS02

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Nocardia seriolae strain HSY-NS02 is characterized by the presence of flagella, which may contribute to its motility in aquatic environments. This strain possesses a single replicon, indicating a streamlined genomic structure that could influence its replication and stability within hosts. It has been identified in association with the Japanese eel, Anguilla japonica, suggesting a specific host interaction that could be significant for understanding its ecological role. The accession number for Nocardia seriolae strain HSY-NS02 is RCNK00000000.1, which allows for further genomic and taxonomic studies. The relationship between this strain and its host may offer insights into the dynamics of microbial communities in aquatic ecosystems, particularly in how Nocardia species can impact fish health and disease. Understanding these interactions is crucial for managing fish populations and maintaining biodiversity in their habitats, especially considering the potential implications for aquaculture and wild fishery practices.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia seriolae
Strainstrain HSY-NS02

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Anguilla japonica
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Nocardia seriolae strain HSY-NS02 Scaffold317, whole genome

Gene Summary

Adenine Count

1227508 bp

Thymine Count

1238435 bp

Guanine Count

2658695 bp

Cytosine Count

2637537 bp

Genome Length

7762195 bp

Protein-coding Genes

6841 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
elongation factor tsD6158_05660Not AvailableNegative1224287 - 122510228907.5
30s ribosomal protein s2D6158_05665Not AvailableNegative1225211 - 122607131018.1
m23 family peptidaseD6158_05670Not AvailablePositive1226595 - 122711618165.8
duf1990 domain-containing proteinD6158_05675Not AvailablePositive1227277 - 122779219105.6
hypothetical proteinD6158_05680Not AvailableNegative1228015 - 122837712644.8
siderophore-interacting proteinD6158_05685Not AvailableNegative1228549 - 122931027480.4
n-formylglutamate amidohydrolaseD6158_05690Not AvailableNegative1229396 - 123018728406.1
tyrosine recombinase xercD6158_05695Not AvailableNegative1230207 - 123113033390.2
fadr family transcriptional regulatorD6158_05700Not AvailableNegative1231550 - 123230527358.7
amino acid permeaseD6158_05705Not AvailablePositive1232419 - 123392453124.8

Displaying genes 1081 – 1090 of 6910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.