Escherichia coli strain NGE6

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain NGE6 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles. As a facultative anaerobe, it can thrive in both aerobic and anaerobic environments, with an optimal growth temperature of 37°C, categorizing it as mesophilic. This strain possesses flagella, enabling mobility, and has a simple genomic architecture characterized by a single replicon and a double membrane structure. NGE6 is associated with various hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and a diverse range of other mammals, birds, and even plants such as Solanum lycopersicum (tomato) and Brassica oleracea var. italica (broccoli). This wide host range indicates its adaptability and ecological versatility. The strain is notably pathogenic to humans, implicated in numerous health conditions including urinary tract infections (UTIs), gastrointestinal infections, and severe complications such as hemolytic uremic syndrome (HUS) and neonatal meningitis. This pathogenicity underscores the significance of E. coli NGE6 in public health, particularly regarding foodborne infections and urinary tract infections. Biologically, the presence of E. coli NGE6 in both free-living and host-associated environments highlights its role in the microbiome and the potential for cross-species transmission. Its ability to cause a range of diseases illustrates the intricate relationships between microbial organisms and their hosts, emphasizing the importance of monitoring such strains in clinical and environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain NGE6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain NGE6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain NGE6


Gene Summary

Adenine Count

1211606 bp

Thymine Count

1205922 bp

Guanine Count

1228989 bp

Cytosine Count

1238887 bp

Genome Length

4885404 bp

Protein-coding Genes

4414 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)h dehydrogenase (quinone)DGR76_00805Not AvailablePositive160499 - 16109520846.8
hypothetical proteinDGR76_00810Not AvailablePositive161116 - 1613438524.89
bifunctional glucose-1-phosphatase/inositol phosphataseDGR76_00815Not AvailableNegative161381 - 16262245667.3
ycce family proteinDGR76_00820Not AvailableNegative162915 - 16416847901.3
curved dna-binding proteinDGR76_00825Not AvailablePositive164428 - 16534834420.9
chaperone modulatory protein cbpmDGR76_00830Not AvailablePositive165348 - 16565311512.9
molecular chaperone tordDGR76_00835Not AvailableNegative165805 - 16640422473.7
trimethylamine-n-oxide reductase toraDGR76_00840Not AvailableNegative166401 - 16894794547.3
pentaheme c-type cytochrome torcDGR76_00845Not AvailableNegative168947 - 17011943624.9
two-component system response regulator torrDGR76_00850Not AvailablePositive170249 - 17094126270.9

Displaying genes 351 – 360 of 4667 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total