Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain NGE6 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1211606 bp
Thymine Count
1205922 bp
Guanine Count
1228989 bp
Cytosine Count
1238887 bp
Genome Length
4885404 bp
Protein-coding Genes
4414 genes
Non-Coding Genes
253 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhs repeat protein | DGR76_11940 | Not Available | Positive | 2503790 - 2506169 | 87657.5 |
| is1 family transposase | DGR76_11945 | Not Available | Positive | 2506170 - 2506286 | 4500.51 |
| flii/yscn family atpase | DGR76_11955 | Not Available | Positive | 2506733 - 2508052 | 48549.6 |
| type iii secretion protein | DGR76_11960 | Not Available | Positive | 2508033 - 2508500 | 18646.7 |
| effector protein | DGR76_11970 | Not Available | Positive | 2508736 - 2509353 | 23881.1 |
| yscq/hrcq family type iii secretion apparatus protein | DGR76_11975 | Not Available | Positive | 2509353 - 2510300 | 36349.6 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | DGR76_11980 | Not Available | Positive | 2510290 - 2510955 | 24496.4 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | DGR76_11985 | Not Available | Positive | 2510965 - 2511225 | 9430.85 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | DGR76_11990 | Not Available | Positive | 2511227 - 2511994 | 28182.7 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | DGR76_11995 | Not Available | Positive | 2512003 - 2513115 | 43024.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




