Pararobbsia silviterrae strain DHC34

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Pararobbsia

Description

Pararobbsia silviterrae strain DHC34 is characterized by possessing a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession number RBZU00000000.1. The presence of only one replicon may suggest a streamlined genomic organization, which can be advantageous for the organism in terms of replication efficiency and stability. This trait can influence the strain's adaptability and potential for survival in various environments. In ecological contexts, the streamlined genome of Pararobbsia silviterrae strain DHC34 may allow it to occupy specific niches or thrive in particular habitats where resource availability and competition are factors. The genomic simplicity could facilitate rapid responses to environmental changes, promoting resilience in fluctuating conditions. Overall, the unique genomic trait of a single replicon in Pararobbsia silviterrae strain DHC34 provides insights into its potential ecological strategies and evolutionary adaptations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusPararobbsia
SpeciesPararobbsia silviterrae
Strainstrain DHC34

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pararobbsia silviterrae strain DHC34 scaffold43, whole genome

Gene Summary

Adenine Count

1181458 bp

Thymine Count

1193316 bp

Guanine Count

2156308 bp

Cytosine Count

2110670 bp

Genome Length

6642683 bp

Protein-coding Genes

5540 genes

Non-Coding Genes

155 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aromatic ring-opening dioxygenase subunit ligaD7S86_06960Not AvailablePositive1564862 - 156518812477.2
extradiol ring-cleavage dioxygenaseD7S86_06965Not AvailablePositive1565185 - 156600329832.6
5-carboxymethyl-2-hydroxymuconate isomeraseD7S86_06970Not AvailablePositive1566014 - 156641514766.6
2-oxo-hepta-3-ene-1,7-dioic acid hydrataseD7S86_06975Not AvailablePositive1566412 - 156726030738.6
2-dehydro-3-deoxyglucarate aldolaseD7S86_06980Not AvailablePositive1567273 - 156807928558.4
helix-turn-helix domain-containing proteinD7S86_06985Not AvailableNegative1568123 - 156899533147.8
4-hydroxybenzoate 3-monooxygenaseD7S86_06990Not AvailablePositive1569191 - 157037544373.0
dna-binding response regulatorD7S86_06995Not AvailableNegative1570479 - 157117725209.6
sensor histidine kinaseD7S86_07000Not AvailableNegative1571162 - 157190527329.1
hypothetical proteinD7S86_07005Not AvailablePositive1572006 - 15722157403.83

Displaying genes 1521 – 1530 of 5695 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.