Coprobacter fastidiosus NSB1 = JCM 33896 strain NSB1

rodanaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Barnesiellaceae

Genus

Coprobacter

Description

Coprobacter fastidiosus strain NSB1, designated as JCM 33896, is classified as a Gram-negative, non-motile, rod-shaped bacterium. This strain exhibits strict anaerobic growth, meaning it thrives in environments devoid of oxygen. It is noteworthy that Coprobacter fastidiosus is a non-spore-forming organism, indicating that it does not produce spores as a means of survival under adverse conditions. This strain is characterized by a single replicon, which is a distinct feature of its genetic organization. The accession number for this strain is RBXN00000000.1, providing a reference point for researchers interested in studying its genomic properties. The ecological role of Coprobacter fastidiosus, particularly in anaerobic environments such as the gastrointestinal tracts of animals, suggests its potential involvement in the digestion of complex organic materials. As a member of the gut microbiota, this bacterium may contribute to the breakdown of dietary fibers and the fermentation processes that produce short-chain fatty acids, which are beneficial for host health. Understanding the properties and interactions of Coprobacter fastidiosus can shed light on the complex dynamics of microbial communities in anaerobic environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBarnesiellaceae
GenusCoprobacter
SpeciesCoprobacter fastidiosus
StrainNSB1 = JCM 33896 strain NSB1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Coprobacter fastidiosus NSB1 = JCM 33896 strain NSB1

Gene Summary

Adenine Count

1062793 bp

Thymine Count

1041029 bp

Guanine Count

642659 bp

Cytosine Count

665339 bp

Genome Length

3411820 bp

Protein-coding Genes

2670 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized protein duf3575BC742_2705Not AvailableNegative3313611 - 331485547451.9
d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4)BC742_2706Not AvailableNegative3315935 - 331739554380.2
thymidine kinaseBC742_2707Not AvailablePositive3317567 - 331815121824.1
putative purr-regulated permease permBC742_2708Not AvailablePositive3318206 - 331932442640.2
hypothetical proteinBC742_2710Not AvailablePositive3320663 - 33208637129.04
putative secreted protein (por secretion system target)BC742_2711Not AvailableNegative3321221 - 3324088108667.0
glycosyl transferase family wbsxBC742_2712Not AvailableNegative3324246 - 332558050751.2
susd/ragb-like outer membrane lipoproteinBC742_2713Not AvailableNegative3325611 - 332763877393.1
tonb-linked susc/raga family outer membrane proteinBC742_2714Not AvailableNegative3327657 - 3331031125385.0
putative secreted protein (por secretion system target)BC742_2715Not AvailableNegative3331088 - 333298067379.0

Displaying genes 2661 – 2670 of 2733 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.