Coprobacter fastidiosus NSB1 = JCM 33896 strain NSB1

rodanaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Barnesiellaceae

Genus

Coprobacter

Description

Coprobacter fastidiosus strain NSB1, designated as JCM 33896, is classified as a Gram-negative, non-motile, rod-shaped bacterium. This strain exhibits strict anaerobic growth, meaning it thrives in environments devoid of oxygen. It is noteworthy that Coprobacter fastidiosus is a non-spore-forming organism, indicating that it does not produce spores as a means of survival under adverse conditions. This strain is characterized by a single replicon, which is a distinct feature of its genetic organization. The accession number for this strain is RBXN00000000.1, providing a reference point for researchers interested in studying its genomic properties. The ecological role of Coprobacter fastidiosus, particularly in anaerobic environments such as the gastrointestinal tracts of animals, suggests its potential involvement in the digestion of complex organic materials. As a member of the gut microbiota, this bacterium may contribute to the breakdown of dietary fibers and the fermentation processes that produce short-chain fatty acids, which are beneficial for host health. Understanding the properties and interactions of Coprobacter fastidiosus can shed light on the complex dynamics of microbial communities in anaerobic environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBarnesiellaceae
GenusCoprobacter
SpeciesCoprobacter fastidiosus
StrainNSB1 = JCM 33896 strain NSB1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Coprobacter fastidiosus NSB1 = JCM 33896 strain NSB1

Gene Summary

Adenine Count

1062793 bp

Thymine Count

1041029 bp

Guanine Count

642659 bp

Cytosine Count

665339 bp

Genome Length

3411820 bp

Protein-coding Genes

2670 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha-galactosidaseBC742_1990Not AvailableNegative2457452 - 245956678610.7
peroxiredoxinBC742_1991Not AvailableNegative2459601 - 246029026550.2
alginate lyaseBC742_1992Not AvailableNegative2460647 - 246264176412.6
hypothetical proteinBC742_1993Not AvailableNegative2463070 - 24632286320.93
5,10-methylenetetrahydrofolate reductase (nad(p))BC742_1994Not AvailablePositive2463361 - 246432036167.6
dna polymerase-3 subunit delta'BC742_1995Not AvailablePositive2464345 - 246546943638.8
Tmrna,resume consensus sequence (at 89): tttaactggcgaaaataaNot AvailableNot AvailablePositive2465558 - 2465953Not Available
rna polymerase sigma factor (sigma-70 family)BC742_1997Not AvailableNegative2466146 - 246662519153.3
putative abc transport system permease proteinBC742_1998Not AvailableNegative2467054 - 246783028790.3
amino acid abc transporter atp-binding protein (paat family)BC742_1999Not AvailableNegative2467827 - 246845323232.2

Displaying genes 1961 – 1970 of 2733 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.