Pseudomonas syringae pv. apii strain ICMP 11947

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. apii strain ICMP 11947 is characterized by possessing a single replicon, which is significant for its genetic stability and potential adaptability. The strain is cataloged under the accession number RBUG00000000.1, indicating its availability in genetic sequence databases for research and reference. This strain belongs to the Pseudomonas syringae species, known for its ecological role as a plant pathogen. It primarily affects plants, leading to various disease symptoms, particularly in Apiaceae crops, such as celery and parsley. The pathogenicity of Pseudomonas syringae pv. apii is attributed to its ability to manipulate host plant defenses and promote disease development. Understanding the genetic makeup and replicon structure of Pseudomonas syringae pv. apii strain ICMP 11947 can provide insights into its evolutionary adaptations and interactions with host plants. The single replicon may reflect a streamlined genome that supports efficient replication and gene expression necessary for survival in specific environments. The ecological implications of this strain highlight the importance of monitoring plant pathogenic bacteria in agricultural settings. Effective management strategies are essential to mitigate the impact of such pathogens on crop yield and quality, and understanding the genetics of strains like ICMP 11947 is crucial for developing targeted control measures.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. apii strain ICMP 11947
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. apii strain ICMP 11947

Gene Summary

Adenine Count

1192071 bp

Thymine Count

1175972 bp

Guanine Count

1725504 bp

Cytosine Count

1732891 bp

Genome Length

5837043 bp

Protein-coding Genes

4969 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter periplasmic substrate-binding proteinALP23_02052Not AvailableNegative4161971 - 416301437861.0
taurine abc-type transport system, permease protein taucALP23_02053Not AvailableNegative4163029 - 416389531838.6
abc transporterALP23_02054Not AvailableNegative4164128 - 416500932548.2
autotransporter barrel protein with phosphatase-like passenger domainALP23_02055Not AvailablePositive4166170 - 4169238106153.0
hypothetical proteinALP23_02056Not AvailablePositive4169398 - 417030932743.5
amino acid adenylationALP23_05194Not AvailableNegative4170326 - 417207763572.0
transcriptional regulator, gntr familyALP23_01035Not AvailableNegative4172224 - 417330340317.6
amidase proteinALP23_100289Not AvailablePositive4173495 - 417493750690.0
putative polysaccharide deacetylaseALP23_01036Not AvailablePositive4175014 - 417589533851.3
proteinral substrate transporter:major facilitator superfamilyALP23_01037Not AvailablePositive4175923 - 417726347652.4

Displaying genes 3631 – 3640 of 5076 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.