Pseudomonas syringae pv. aptata strain ICMP 11935

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. aptata strain ICMP 11935 is a mesophilic, free-living, rod-shaped bacterium that exhibits a Gram-negative cell wall structure. This strain is characterized by its aerobic metabolism, relying on heterotrophic energy sources. It is motile, possessing flagella that facilitate its movement. The bacterium typically exists as single cells and is found in multiple habitats, indicating its adaptability to different environmental conditions. Pseudomonas syringae pv. aptata strain ICMP 11935 has been associated with Solanum lycopersicum, commonly known as the tomato plant, where it is known to cause bacterial speck disease. This disease can lead to significant agricultural impacts, affecting crop yield and quality. In terms of genetic structure, this strain has a single replicon and is surrounded by a double membrane, a characteristic feature of Gram-negative bacteria. The understanding of its biotic relationships, particularly its pathogenicity towards tomato plants, highlights the importance of monitoring and managing this bacterium in agricultural settings to prevent crop loss. The strain is cataloged under the accession number RBUF00000000.1, which can be useful for further research and study in microbiology and plant pathology. Overall, Pseudomonas syringae pv. aptata strain ICMP 11935 serves as a significant example of the complex interactions between microorganisms and their plant hosts, with implications for plant health and agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. aptata strain ICMP 11935

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. aptata strain ICMP 11935
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Solanum lycopersicum
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. aptata strain ICMP 11935

Gene Summary

Adenine Count

1235513 bp

Thymine Count

1233660 bp

Guanine Count

1754486 bp

Cytosine Count

1753086 bp

Genome Length

6044375 bp

Protein-coding Genes

5681 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinALP24_03962Not AvailablePositive7881 - 80546519.9
smr domain-containing proteinALP24_03963Not AvailableNegative8514 - 907120988.3
hypothetical proteinALP24_03964Not AvailableNegative9117 - 943411202.0
isochorismatase famly proteinALP24_03965Not AvailableNegative9583 - 1017321291.8
50s ribosomal protein l3 glutamine methyltransferaseALP24_03966Not AvailablePositive10429 - 1134334339.6
hypothetical proteinALP24_03967Not AvailableNegative11418 - 1201423034.8
alpha/beta hydrolase proteinALP24_05461Not AvailableNegative12351 - 1438472375.8
major facilitator transporterALP24_03970Not AvailablePositive14643 - 1527822935.2
transporterALP24_03971Not AvailablePositive15278 - 1579018293.6
acireductone dioxygenaseALP24_03972Not AvailablePositive16482 - 1702720428.0

Displaying genes 51 – 60 of 5740 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

166 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 166 metabolites

Health Effects

Health ConditionRelationReference
Bacterial speck of tomatoCausesPMC6946519

Displaying health effects 1 – 1 of 1 in total