Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas syringae |
| Strain | pv. aptata strain ICMP 11935 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Solanum lycopersicum |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1235513 bp
Thymine Count
1233660 bp
Guanine Count
1754486 bp
Cytosine Count
1753086 bp
Genome Length
6044375 bp
Protein-coding Genes
5681 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii effector protein avre1 | ALP24_00126 | Not Available | Positive | 2038671 - 2039975 | 47074.6 |
| dspfavrf | ALP24_00127 | Not Available | Negative | 2040037 - 2040426 | 14434.1 |
| effector protein hopm1 | ALP24_00128 | Not Available | Negative | 2040536 - 2041675 | 38954.3 |
| type iii secretino system effector protein hopm1 | ALP24_00129 | Not Available | Negative | 2041672 - 2042643 | 34074.5 |
| type iii secretion system chaperone protein shcm | ALP24_00130 | Not Available | Negative | 2042640 - 2043134 | 18099.5 |
| type iii secretion system helper protein hrpw1 | ALP24_00131 | Not Available | Positive | 2043439 - 2044080 | 22261.5 |
| type iii helper protein hrpw1 | ALP24_00132 | Not Available | Positive | 2044218 - 2044781 | 19872.9 |
| type iii effector hopaa1 | ALP24_00133 | Not Available | Negative | 2044865 - 2045179 | 10440.1 |
| type iii effector locus protein | ALP24_00134 | Not Available | Positive | 2046561 - 2047568 | 37729.1 |
| transcriptional regulatory protein | ALP24_00135 | Not Available | Negative | 2047656 - 2048573 | 33978.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.









