Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329 is a bacterial strain characterized by a single replicon. This strain is notably associated with the host plant Avena sativa, commonly known as oat. The genetic information for strain ICMP 4329 is available under the accession number RBSJ00000000.1. This accession provides insights into the genomic characteristics of the strain, which can be valuable for research in plant pathology and microbiology. The association of Pseudomonas coronafaciens pv. coronafaciens with Avena sativa suggests a potential role in the ecology of oat crops, possibly influencing plant health and disease dynamics. Understanding the interactions between this bacterial strain and its host can lead to improved management strategies in agriculture, particularly in dealing with diseases that affect oat production.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. coronafaciens strain ICMP 4329

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Avena sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329

Gene Summary

Adenine Count

1277497 bp

Thymine Count

1284329 bp

Guanine Count

1735858 bp

Cytosine Count

1719605 bp

Genome Length

6036360 bp

Protein-coding Genes

5099 genes

Non-Coding Genes

239 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii effector hopab2ALP72_03430Not AvailablePositive4490277 - 449125435281.9
hypothetical proteinALP72_03431Not AvailablePositive4491646 - 449213117474.7
atp-binding proteinALP72_03432Not AvailablePositive4496447 - 4499161101532.0
hypothetical proteinALP72_03433Not AvailablePositive4499393 - 450066143652.2
twin-arginine translocation pathway signalALP72_03434Not AvailablePositive4501027 - 450240050569.4
membrane-bound lytic murein transglycosylase fALP72_100017Not AvailableNegative4502903 - 450458263221.4
phosphoribosylformylglycinamidine synthaseALP72_03435Not AvailablePositive4504606 - 4508502140849.0
hypothetical proteinALP72_05377Not AvailablePositive4508508 - 450881911439.5
hypothetical proteinALP72_03436Not AvailableNegative4508976 - 450953921501.9
mutt/nudix proteinALP72_03437Not AvailableNegative4509617 - 451016820769.0

Displaying genes 4121 – 4130 of 5338 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.