Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329 is a bacterial strain characterized by a single replicon. This strain is notably associated with the host plant Avena sativa, commonly known as oat. The genetic information for strain ICMP 4329 is available under the accession number RBSJ00000000.1. This accession provides insights into the genomic characteristics of the strain, which can be valuable for research in plant pathology and microbiology. The association of Pseudomonas coronafaciens pv. coronafaciens with Avena sativa suggests a potential role in the ecology of oat crops, possibly influencing plant health and disease dynamics. Understanding the interactions between this bacterial strain and its host can lead to improved management strategies in agriculture, particularly in dealing with diseases that affect oat production.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas coronafaciens
Strainpv. coronafaciens strain ICMP 4329

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Avena sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas coronafaciens pv. coronafaciens strain ICMP 4329

Gene Summary

Adenine Count

1277497 bp

Thymine Count

1284329 bp

Guanine Count

1735858 bp

Cytosine Count

1719605 bp

Genome Length

6036360 bp

Protein-coding Genes

5099 genes

Non-Coding Genes

239 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii chaperone protein avrfALP72_00610Not AvailablePositive3285834 - 328622314408.2
type iii secretion system effector avre1ALP72_04708Not AvailableNegative3286284 - 3292250215520.0
type iii effector protein avre1ALP72_04709Not AvailableNegative3292589 - 3295598109925.0
hypothetical proteinALP72_01281Not AvailableNegative3295760 - 329635322914.8
yd repeat proteinALP72_04877Not AvailableNegative3296367 - 3300593157847.0
hypothetical proteinALP72_01282Not AvailableNegative3300596 - 33007877109.08
phosphate acetyltransferaseALP72_05110Not AvailableNegative3300791 - 330256463891.9
peptidyl-prolyl cis-trans isomeraseALP72_02222Not AvailablePositive3302899 - 330338416940.7
glutathione peroxidaseALP72_02223Not AvailablePositive3303514 - 330400217621.1
oxidoreductase fad/fmn-binding proteinALP72_100345Not AvailablePositive3304177 - 330529240661.4

Displaying genes 3061 – 3070 of 5338 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.