Pseudomonas syringae pv. primulae strain ICMP 8670

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. primulae strain ICMP 8670 is characterized by having a single replicon, which indicates a streamlined genomic organization. The strain is cataloged under the accession number RBRQ00000000.1, which is essential for its identification and classification in microbial databases. Pseudomonas syringae is known for its role as a plant pathogen, capable of infecting a wide range of plant species. The specific pathovar, primulae, suggests a specialized interaction with primrose plants. This specialization may offer insights into the ecological dynamics between the pathogen and its host, particularly in how the bacterium adapts to and exploits specific plant environments. The presence of a single replicon in Pseudomonas syringae pv. primulae strain ICMP 8670 may reflect adaptation strategies that promote efficient replication and resource utilization within its ecological niche. This trait could contribute to the pathogen's ability to effectively colonize host plants and potentially impact agricultural practices. In summary, Pseudomonas syringae pv. primulae strain ICMP 8670, with its single replicon and specific pathovar designation, exemplifies the intricate relationships between microbial pathogens and their plant hosts. Understanding these traits can provide valuable insights into managing plant diseases and improving crop resilience.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. primulae strain ICMP 8670
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. primulae strain ICMP 8670

Gene Summary

Adenine Count

1293567 bp

Thymine Count

1302667 bp

Guanine Count

1843912 bp

Cytosine Count

1836969 bp

Genome Length

6298286 bp

Protein-coding Genes

5223 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
site-specific recombinase, phage integrase familyALP92_02051Not AvailableNegative3529151 - 353041348626.6
abc transporter, atp-binding proteinALP92_02052Not AvailablePositive3530561 - 353225262437.0
transcription elongation factor grebALP92_02053Not AvailableNegative3532305 - 353280218026.8
lipoproteinALP92_02054Not AvailableNegative3532878 - 353323113187.3
type iii chaperone shcs1ALP92_02055Not AvailablePositive3533427 - 353390017201.5
type iii effector hops1ALP92_101308Not AvailablePositive3533913 - 353480932750.2
type iii effector hopo1-2ALP92_02056Not AvailablePositive3534828 - 353572432647.4
type iii effector hopt1-2ALP92_02057Not AvailablePositive3535730 - 353689942086.8
type iii effector hopo1-3ALP92_102625Not AvailablePositive3537246 - 353815132814.6
type iii effector hopt2ALP92_04567Not AvailablePositive3538164 - 353854213583.3

Displaying genes 3001 – 3010 of 5305 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.