Pseudomonas cichorii strain ICMP 3353

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas cichorii strain ICMP 3353 is a Gram-negative bacterium known for its association with various host plants, including Solanum lycopersicum (tomato), Geranium, Cichorium intybus (endive), Ocimum basilicum (basil), Chrysanthemum, Pelargonium x hortorum (geranium), Craugastor crassidigitus (a frog species), and Crinum macowanii (a flowering plant). This strain has been implicated in causing health issues, specifically lettuce midrib rot, which is a significant concern in agricultural settings. The strain is characterized by having a single replicon, indicating a relatively streamlined genomic organization. The accession number for this strain is RBRE00000000.1, which provides a reference point for studies focused on its genetic and phenotypic traits. Pseudomonas cichorii's ability to infect a diversity of plant hosts suggests its ecological versatility and potential impact on agricultural productivity. Its pathogenic effects on lettuce and other crops highlight the importance of monitoring and managing bacterial diseases in horticulture. Understanding the interactions between Pseudomonas cichorii and its various hosts can inform strategies for disease prevention and control, ultimately contributing to sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cichorii
Strainstrain ICMP 3353

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cichorii strain ICMP 3353
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Viridiplantae, Solanum lycopersicum, Geranium
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas cichorii strain ICMP 3353 PchICMP3353_Contig_62, whole

Gene Summary

Adenine Count

1244678 bp

Thymine Count

1244772 bp

Guanine Count

1768612 bp

Cytosine Count

1762269 bp

Genome Length

6028563 bp

Protein-coding Genes

4796 genes

Non-Coding Genes

132 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
s iii aminotransferaseALQ04_01351Not AvailableNegative80505 - 83477109130.0
dtdp-glucose 4,6-dehydrataseALQ04_01352Not AvailablePositive83650 - 8473240280.6
glucose-1-phosphate thymidylyltransferaseALQ04_01353Not AvailablePositive84729 - 8560432720.9
dtdp-4-dehydrorhamnose 3,5-epimeraseALQ04_01354Not AvailablePositive85601 - 8614620500.0
sensor histidine kinaseALQ04_01355Not AvailablePositive86222 - 8810870167.4
hypothetical proteinALQ04_01356Not AvailablePositive89477 - 8994717642.0
3',5'-bisphosphate nucleotidaseALQ04_01357Not AvailableNegative89967 - 9082130354.8
adenosine nucleotide hydrolase nudeALQ04_01358Not AvailableNegative90818 - 9138421078.3
had-superfamily hydrolaseALQ04_01359Not AvailablePositive91484 - 9214625376.4
putative phospholipid-binding proteinALQ04_01360Not AvailableNegative92210 - 9265615752.6

Displaying genes 171 – 180 of 4928 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0001418D-alluloseC6H12O6Chemical structure of D-allulose551-68-8
Average180.1559Da
Monoisotopic180.0633881Da
BASm0014073D-TagatoseC6H12O6Chemical structure of D-Tagatose20197-42-6
Average180.156Da
Monoisotopic180.063388106Da

Displaying 1–3 of 3 metabolites

Health Effects

Health ConditionRelationReference
Lettuce midrib rotCausesPMC9545932
Midrib rotCausesPMC9545932

Displaying health effects 1 – 2 of 2 in total