Pseudomonas syringae pv. berberidis strain ICMP 4065

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. berberidis strain ICMP 4065 is characterized by having a single replicon. This trait is significant as it can influence the bacterium's genetic stability and replication processes. The strain is cataloged under the accession number RBRC00000000.1, which serves as a unique identifier within biological databases, facilitating research and data sharing related to this specific strain. As a member of the Pseudomonas syringae species, this strain is of particular interest to plant pathologists and microbiologists due to its role as a plant pathogen. Pseudomonas syringae is known for causing diseases in various plants, including significant agricultural crops. Particularly, Pseudomonas syringae pv. berberidis is associated with the black-spot disease in the Berberis species, which can have implications for horticulture and agriculture. The presence of a single replicon in this strain may affect its adaptability and pathogenicity. Bacteria with a single replicon may have streamlined regulatory mechanisms, potentially allowing for rapid responses to environmental changes. This could enhance its ability to infect host plants and cause disease, thereby impacting plant health and agricultural productivity. In summary, the unique genetic structure of Pseudomonas syringae pv. berberidis strain ICMP 4065, indicated by its single replicon, highlights its potential adaptability as a plant pathogen, emphasizing the need for continued research into its ecological interactions and effects on plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. berberidis strain ICMP 4065
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. berberidis strain ICMP 4065

Gene Summary

Adenine Count

1302693 bp

Thymine Count

1313375 bp

Guanine Count

1843684 bp

Cytosine Count

1831501 bp

Genome Length

6318234 bp

Protein-coding Genes

5692 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulator, lysr familyALQ06_04855Not AvailableNegative5288099 - 528900733492.9
3-isopropylmalate dehydratase large subunitALQ06_00974Not AvailablePositive5289117 - 529054451050.1
3-isopropylmalate dehydratase small subunitALQ06_00975Not AvailablePositive5290541 - 529118224028.3
3-isopropylmalate dehydrogenaseALQ06_00976Not AvailablePositive5291329 - 529241138755.9
aspartate-semialdehyde dehydrogenaseALQ06_00977Not AvailablePositive5292482 - 529359440402.0
hypothetical proteinALQ06_101424Not AvailableNegative5293605 - 52937726428.73
2-dehydro-3-deoxygalactonokinaseALQ06_100025Not AvailablePositive5293701 - 529476537943.5
4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconateALQ06_00978Not AvailablePositive5294767 - 529540221900.8
mandelate racemase/muconate lactonizing enzyme proteinALQ06_00979Not AvailablePositive5295463 - 529661142268.7
mfs transporter, phthalate permease familyALQ06_00980Not AvailablePositive5296833 - 529814347652.0

Displaying genes 4861 – 4870 of 5766 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.