Pseudomonas syringae pv. delphinii strain ICMP 13052

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. delphinii strain ICMP 13052 is a notable bacterial strain characterized by a single replicon. The genomic data for this strain can be referenced under the accession number RBRA00000000.1. Pseudomonas syringae is known for its role as a plant pathogen, causing disease in various crops. The pv. delphinii variant specifically impacts delphinium plants, leading to significant agricultural concerns due to its potential to cause extensive damage to these ornamental and commercial plants. Understanding the genomic structure of strain ICMP 13052 can provide insights into its pathogenic mechanisms and help develop strategies for managing infections. The streamlined genomic architecture with only one replicon suggests a focused genetic organization, which may be linked to its evolutionary adaptations as a pathogen. This trait can facilitate rapid responses to environmental pressures, such as host plant defenses and changes in ecological conditions. In the broader ecological context, Pseudomonas syringae pv. delphinii strain ICMP 13052 exemplifies the complex interactions between plant pathogens and their host plants. Its ability to thrive and cause disease in specific plant species underscores the importance of monitoring such pathogens in agricultural settings, where they can impact crop health and yield. Understanding this relationship is crucial for developing effective disease management practices and ensuring the sustainability of affected crops.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae group genomosp. 3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas syringae pv. delphinii strain ICMP 13052
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. delphinii strain ICMP 13052

Gene Summary

Adenine Count

1370527 bp

Thymine Count

1362889 bp

Guanine Count

1921343 bp

Cytosine Count

1928787 bp

Genome Length

6611346 bp

Protein-coding Genes

5478 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysm domain-containing proteinALQ08_01715Not AvailableNegative2938130 - 293915537619.2
peptide deformylaseALQ08_01716Not AvailablePositive2939281 - 293978719244.4
methionyl-trna formyltransferaseALQ08_01717Not AvailablePositive2939848 - 294079233561.8
16s rrna methyltransferase bALQ08_01718Not AvailablePositive2940789 - 294211447949.8
trk system potassium uptake protein trkaALQ08_01719Not AvailablePositive2942119 - 294349249761.1
molybdopterin oxidoreductase subunit alphaALQ08_01720Not AvailablePositive2943635 - 294598986681.9
lipid a biosynthesis lauroyl acyltransferaseALQ08_01721Not AvailableNegative2946628 - 294751532635.1
dna-3-methyladenine glycosidase iALQ08_01722Not AvailableNegative2947553 - 294810420925.4
glycyl-trna synthetase subunit alphaALQ08_04375Not AvailablePositive2948064 - 294913140525.1
glycine--trna ligase beta subunitALQ08_100307Not AvailablePositive2949128 - 295118274799.9

Displaying genes 2511 – 2520 of 5586 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.