Pseudomonas syringae pv. atrofaciens strain ICMP 1852

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain ICMP 1852 is a Gram-negative, rod-shaped bacterium characterized as a heterotrophic aerobe. This strain exhibits mobility, facilitated by the presence of flagella, and typically exists as single cells rather than in clusters. It is classified as mesophilic, indicating that it thrives within moderate temperature ranges. The organism has a complex cellular structure, with two membranes surrounding its cytoplasm and a single replicon in its genetic makeup. Its free-living nature suggests that it can survive independently in various habitats, contributing to its ecological versatility. Pseudomonas syringae species, including strain ICMP 1852, are known for their role in plant pathology and are often involved in interactions with plant hosts. Understanding the ecological roles and environmental adaptability of this strain can inform its potential applications in agriculture and biotechnology, particularly in developing strategies for disease management. The diverse habitats in which it can be found underscore its ecological significance and potential impact on plant health and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain ICMP 1852

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain ICMP 1852
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain ICMP 1852

Gene Summary

Adenine Count

1206902 bp

Thymine Count

1195914 bp

Guanine Count

1727068 bp

Cytosine Count

1734779 bp

Genome Length

5948024 bp

Protein-coding Genes

5336 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
conjugal transfer relaxosome component trajALQ20_101763Not AvailablePositive186809 - 18720715067.5
incp-type conjugative transfer protein trbjALQ20_101425Not AvailablePositive187250 - 18800527194.1
p-type conjugative transfer protein trblALQ20_03747Not AvailablePositive188209 - 18959447802.2
hypothetical proteinALQ20_102411Not AvailablePositive189662 - 1898837980.47
plasmid stabilization systemALQ20_03748Not AvailableNegative190246 - 19059613073.7
phage integrase family site-specific recombinaseALQ20_05335Not AvailablePositive191188 - 19149211219.3
pyoverdine rnd-type export system, permease/atp-binding fusion protein pvdtALQ20_04954Not AvailableNegative191493 - 19193915734.8
pyoverdine-specific efflux maca-like proteinALQ20_100415Not AvailableNegative191940 - 19311241913.0
3-oxo-c12-homoserine lactone acylase pvdqALQ20_02851Not AvailablePositive193305 - 19563884707.0
hypothetical proteinALQ20_02852Not AvailableNegative195691 - 19600210958.0

Displaying genes 321 – 330 of 5479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.