Pseudomonas syringae pv. atrofaciens strain ICMP 1852

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain ICMP 1852 is a Gram-negative, rod-shaped bacterium characterized as a heterotrophic aerobe. This strain exhibits mobility, facilitated by the presence of flagella, and typically exists as single cells rather than in clusters. It is classified as mesophilic, indicating that it thrives within moderate temperature ranges. The organism has a complex cellular structure, with two membranes surrounding its cytoplasm and a single replicon in its genetic makeup. Its free-living nature suggests that it can survive independently in various habitats, contributing to its ecological versatility. Pseudomonas syringae species, including strain ICMP 1852, are known for their role in plant pathology and are often involved in interactions with plant hosts. Understanding the ecological roles and environmental adaptability of this strain can inform its potential applications in agriculture and biotechnology, particularly in developing strategies for disease management. The diverse habitats in which it can be found underscore its ecological significance and potential impact on plant health and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain ICMP 1852

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain ICMP 1852
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain ICMP 1852

Gene Summary

Adenine Count

1206902 bp

Thymine Count

1195914 bp

Guanine Count

1727068 bp

Cytosine Count

1734779 bp

Genome Length

5948024 bp

Protein-coding Genes

5336 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system protein icmfALQ20_03784Not AvailablePositive4397109 - 439960194255.9
putative type vi secretion system effector, hcp1 familyALQ20_03785Not AvailablePositive4399736 - 440027519146.4
impa, n-terminalALQ20_03786Not AvailablePositive4400368 - 440146239936.1
topoisomerase domain-containing proteinALQ20_03553Not AvailablePositive4402008 - 440243615473.0
lysm domain-containing proteinALQ20_05240Not AvailableNegative4402469 - 440422661524.9
gntr family transcriptional regulatorALQ20_03013Not AvailableNegative4404331 - 440537737558.9
tonb-dependent outer membrane receptorALQ20_05018Not AvailablePositive4405549 - 440786484062.3
xenobiotic compound monooxygenase a subunitALQ20_100707Not AvailablePositive4407899 - 440922448125.9
rhs proteinALQ20_00200Not AvailableNegative4409405 - 440987118089.9
hsr1-like gtp-binding proteinALQ20_04185Not AvailableNegative4409872 - 441071131350.4

Displaying genes 4191 – 4200 of 5479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.