Pseudomonas syringae pv. atrofaciens strain ICMP 1852

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. atrofaciens strain ICMP 1852 is a Gram-negative, rod-shaped bacterium characterized as a heterotrophic aerobe. This strain exhibits mobility, facilitated by the presence of flagella, and typically exists as single cells rather than in clusters. It is classified as mesophilic, indicating that it thrives within moderate temperature ranges. The organism has a complex cellular structure, with two membranes surrounding its cytoplasm and a single replicon in its genetic makeup. Its free-living nature suggests that it can survive independently in various habitats, contributing to its ecological versatility. Pseudomonas syringae species, including strain ICMP 1852, are known for their role in plant pathology and are often involved in interactions with plant hosts. Understanding the ecological roles and environmental adaptability of this strain can inform its potential applications in agriculture and biotechnology, particularly in developing strategies for disease management. The diverse habitats in which it can be found underscore its ecological significance and potential impact on plant health and agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. atrofaciens strain ICMP 1852

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. atrofaciens strain ICMP 1852
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas syringae pv. atrofaciens strain ICMP 1852

Gene Summary

Adenine Count

1206902 bp

Thymine Count

1195914 bp

Guanine Count

1727068 bp

Cytosine Count

1734779 bp

Genome Length

5948024 bp

Protein-coding Genes

5336 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cbb3-type cytochrome c oxidase, subunit iiALQ20_01503Not AvailablePositive3328311 - 332891922238.9
cytochrome c oxidase, cbb3-type, subunit ivALQ20_01504Not AvailablePositive3328922 - 33291166985.6
cbb3-type cytochrome c oxidase subunitALQ20_01505Not AvailablePositive3329113 - 333009035610.2
type ii toxin-antitoxin system, vapb/fita-like antitoxin proteinALQ20_01506Not AvailablePositive3330171 - 333046710736.0
vapc/fitb-like ribonuclease protein of type ii toxin-antitoxin systemALQ20_01507Not AvailablePositive3330467 - 333091916768.3
type cbb3 cytochrome oxidase accessory protein ccog/fixgALQ20_01508Not AvailablePositive3330978 - 333239653551.2
hypothetical proteinALQ20_01509Not AvailablePositive3332407 - 333294320124.0
copper-translocating p-type atpase:heavy metal translocating p-type atpaseALQ20_04457Not AvailablePositive3332940 - 333536187227.0
malonate decarboxylase, alpha subunitALQ20_04028Not AvailableNegative3335362 - 33355507319.84
paar motif proteinALQ20_04029Not AvailablePositive3335753 - 333606411140.2

Displaying genes 3221 – 3230 of 5479 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.